Miyakogusa Predicted Gene

Lj5g3v0539630.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v0539630.1 tr|B9HAJ6|B9HAJ6_POPTR Ein3-binding f-box protein
4 OS=Populus trichocarpa GN=EBF4 PE=4 SV=1,51.81,3e-17,SUBFAMILY NOT
NAMED,NULL; F-BOX/LEUCINE RICH REPEAT
PROTEIN,NULL,NODE_34412_length_216_cov_656.555542.path1.1
         (252 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC68630 similar to UniRef100_A7P5T8 Cluster: Chromosome...   500   e-141
gnl|LJGI|TC65412 similar to UniRef100_O22512 Cluster: Grr1; n=1;...    82   2e-15

>gnl|LJGI|TC68630 similar to UniRef100_A7P5T8 Cluster: Chromosome chr4 scaffold_6,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr4 scaffold_6, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (21%)
          Length = 728

 Score =  500 bits (252), Expect = e-141
 Identities = 252/252 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtctaaagtcctcggcttttctggaactgatgatttttgccctggggggacaatatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 atgtctaaagtcctcggcttttctggaactgatgatttttgccctggggggacaatatac 302

                                                                       
Query: 61  acaaaccccaaggaagcaagtttcttcctgtctcatggccttccagttgatgtatacttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 acaaaccccaaggaagcaagtttcttcctgtctcatggccttccagttgatgtatacttt 362

                                                                       
Query: 121 cctgctcggaaaaggtcacgaatcagtgctccatttgttttcagcagagaatggttggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cctgctcggaaaaggtcacgaatcagtgctccatttgttttcagcagagaatggttggag 422

                                                                       
Query: 181 cagaagcaggagacatctattgaaactttgccagatgaatgcctgtttgaaatcttcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cagaagcaggagacatctattgaaactttgccagatgaatgcctgtttgaaatcttcagg 482

                       
Query: 241 aagttgccaggt 252
           ||||||||||||
Sbjct: 483 aagttgccaggt 494


>gnl|LJGI|TC65412 similar to UniRef100_O22512 Cluster: Grr1; n=1; Glycine max|Rep:
           Grr1 - Glycine max (Soybean), partial (77%)
          Length = 1991

 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                    
Query: 178 gagcagaagcaggagacatctattgaaactttgccagatgaatgcctgtttgaaatc 234
           ||||| ||||||||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct: 415 gagcaaaagcaggagacgtgtattgaaactttgccagatgaatgcctctttgaaatc 471