Miyakogusa Predicted Gene
- Lj5g3v0510890.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0510890.1 Non Chatacterized Hit- tr|I3T9E4|I3T9E4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,RNase_PH,Exoribonuclease, phosphorolytic domain 1; EXOSOME
COMPLEX EXONUCLEASE RRP42 (RIBOSOMAL RNA ,CUFF.53124.1
(546 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC60419 similar to UniRef100_A7P612 Cluster: Chromosome... 997 0.0
gnl|LJGI|GO028099 similar to UniRef100_A7P612 Cluster: Chromosom... 135 3e-31
>gnl|LJGI|TC60419 similar to UniRef100_A7P612 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (98%)
Length = 1125
Score = 997 bits (503), Expect = 0.0
Identities = 546/565 (96%), Gaps = 19/565 (3%)
Strand = Plus / Plus
Query: 1 atggtgggtttatctcttggtgagcgacatttcatccaaggtggcattgctcaggatctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 atggtgggtttatctcttggtgagcgacatttcatccaaggtggcattgctcaggatctt 135
Query: 61 cgctgtgatggtagaaagagattgacttaccggccaatctatgttgaaactggagtgatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 cgctgtgatggtagaaagagattgacttaccggccaatctatgttgaaactggagtgatt 195
Query: 121 cctcaggcacatggttcagctagaatcagaatgggtgctacagaggtcattgccagtgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 cctcaggcacatggttcagctagaatcagaatgggtgctacagaggtcattgccagtgtg 255
Query: 181 aaggctgaacttgggaagccaagcttattacaacctgacaaagggaaagtctctatatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aaggctgaacttgggaagccaagcttattacaacctgacaaagggaaagtctctatatat 315
Query: 241 attgattgtagttcgactgcagagccagcttttgagggtagagggggtgatgacttgtca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 attgattgtagttcgactgcagagccagcttttgagggtagagggggtgatgacttgtca 375
Query: 301 gcagaactgtctgtagctcttcaacgcagtctcttgggcgctaaaagtggagcaggtgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gcagaactgtctgtagctcttcaacgcagtctcttgggcgctaaaagtggagcaggtgct 435
Query: 361 ggtattgatctctcctcgctcattgttgttgaagggaaaatttgttgggatctttatatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggtattgatctctcctcgctcattgttgttgaagggaaaatttgttgggatctttatatt 495
Query: 421 gatggacttgttgttagctcagatggaaatttgttagacgcactaggggctgccatta-- 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gatggacttgttgttagctcagatggaaatttgttagacgcactaggggctgccattaag 555
Query: 479 -----------------aggtattccaagagtccaagttgctgctggtgcgtcaggtgat 521
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gctgctttgagcaatacaggtattccaagagtccaagttgctgctggtgcgtcaggtgat 615
Query: 522 gagaaaccagaagttgaaataagtg 546
|||||||||||||||||||||||||
Sbjct: 616 gagaaaccagaagttgaaataagtg 640
>gnl|LJGI|GO028099 similar to UniRef100_A7P612 Cluster: Chromosome chr4 scaffold_6,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr4 scaffold_6, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (31%)
Length = 549
Score = 135 bits (68), Expect = 3e-31
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 479 aggtattccaagagtccaagttgctgctggtgcgtcaggtgatgagaaaccagaagttga 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aggtattccaagagtccaagttgctgctggtgcgtcaggtgatgagaaaccagaagttga 472
Query: 539 aataagtg 546
||||||||
Sbjct: 471 aataagtg 464