Miyakogusa Predicted Gene

Lj5g3v0483820.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v0483820.1 tr|G7I7N1|G7I7N1_MEDTR Formin 2B OS=Medicago
truncatula GN=MTR_1g013800 PE=4 SV=1,66.24,0,FH2,Actin-binding FH2;
PTEN_C2,Tensin phosphatase, C2 domain; no description,NULL; seg,NULL;
Formin ,CUFF.53067.1
         (4869 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC78497 homologue to UniRef100_Q5MFB2 Cluster: Cytochro...    76   2e-12
gnl|LJGI|DC594521 similar to UniRef100_A7P640 Cluster: Chromosom...    58   5e-07

>gnl|LJGI|TC78497 homologue to UniRef100_Q5MFB2 Cluster: Cytochrome c biogenesis ccmB;
            n=1; Amborella trichopoda|Rep: Cytochrome c biogenesis
            ccmB - Amborella trichopoda, partial (8%)
          Length = 1090

 Score = 75.8 bits (38), Expect = 2e-12
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                        
Query: 2379 ccccacccaatctaaaataatttctccacggctgcatcaagctaatagatctgctcctgc 2438
            |||||||||| |||  |||||||||| | || || |||| |||| ||||||||||||  |
Sbjct: 498  ccccacccaaactaccataatttctctatggttgtatcatgctattagatctgctccaac 439

                                  
Query: 2439 ttcttattctaactccttgcaa 2460
            ||||||||||||||||||||||
Sbjct: 438  ttcttattctaactccttgcaa 417


>gnl|LJGI|DC594521 similar to UniRef100_A7P640 Cluster: Chromosome chr4 scaffold_6,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr4 scaffold_6, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (22%)
          Length = 432

 Score = 58.0 bits (29), Expect = 5e-07
 Identities = 74/89 (83%)
 Strand = Plus / Plus

                                                                       
Query: 874 atgatgtttcgggtgatgttcaatacggcattcataagatcaaatattttgatgcttaac 933
           ||||||||||| || |||||||| || || ||  | ||||| |||||| |||||||||| 
Sbjct: 344 atgatgtttcgagtaatgttcaacacagcttttgttagatctaatattctgatgcttaat 403

                                        
Query: 934 cgtgatgaaattgatatgttatggaatgc 962
           || ||||||||||| || |||||| ||||
Sbjct: 404 cgggatgaaattgacattttatgggatgc 432