Miyakogusa Predicted Gene
- Lj5g3v0391470.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0391470.1 CUFF.52918.1
(1047 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC74080 similar to UniRef100_Q944K3 Cluster: Histone de... 1907 0.0
gnl|LJGI|BP069598 similar to UniRef100_Q944K3 Cluster: Histone d... 163 3e-39
>gnl|LJGI|TC74080 similar to UniRef100_Q944K3 Cluster: Histone deacetylase 2; n=1;
Arabidopsis thaliana|Rep: Histone deacetylase 2 -
Arabidopsis thaliana (Mouse-ear cress), partial (88%)
Length = 1529
Score = 1907 bits (962), Expect = 0.0
Identities = 1024/1047 (97%)
Strand = Plus / Plus
Query: 1 atgtcgtcgtcttcttctggtaccgacgctctagctcttgcgcgcaaccgcatcctctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atgtcgtcgtcttcttctggtaccgacgctctagctcttgcgcgcaaccgcatcctctca 189
Query: 61 agcaagctctacttcgatgtgcctccttccaaggttccgcttatctactccgagtcttac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 agcaagctctacttcgatgtgcctccttccaaggttccgcttatctactccgagtcttac 249
Query: 121 gatatttcatttctcggcatagagaaactgcacccgtttgattcgtccaaatggggacga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gatatttcatttctcggcatagagaaactgcacccgtttgattcgtccaaatggggacga 309
Query: 181 atttgtggatttcttgtctcttttgatgttttggataagaaatgcattgttgagcctctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atttgtggatttcttgtctcttttgatgttttggataagaaatgcattgttgagcctctt 369
Query: 241 gaagcttccaaggatgatttactagtggtgcactcagagtcgtacttgaatagcctgaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gaagcttccaaggatgatttactagtggtgcactcagagtcgtacttgaatagcctgaag 429
Query: 301 gaaagttcaaatgttgctacgataattgaggtccctcctgtggcgttatttcccaactgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gaaagttcaaatgttgctacgataattgaggtccctcctgtggcgttatttcccaactgt 489
Query: 361 cttgtgcaaaataaagttcttttcccattcaggaagcaggttggaggaactatactggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cttgtgcaaaataaagttcttttcccattcaggaagcaggttggaggaactatactggct 549
Query: 421 gtgaaacttgcaaaggagagaggatgggccattaatgtagggggaggttttcatcactgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gtgaaacttgcaaaggagagaggatgggccattaatgtagggggaggttttcatcactgc 609
Query: 481 tctgcagaaaaaggaggtggattttgtgcttatgcagatatttccctatgtatccacttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tctgcagaaaaaggaggtggattttgtgcttatgcagatatttccctatgtatccacttt 669
Query: 541 gcatttgttaggttgaatatttcaagagtgatgatcattgatcttgatgcacatcaagga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gcatttgttaggttgaatatttcaagagtgatgatcattgatcttgatgcacatcaagga 729
Query: 601 aatggtcatgaaacggactttgctgatgatagccgagtctatatcctggatatgtataac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 aatggtcatgaaacggactttgctgatgatagccgagtctatatcctggatatgtataac 789
Query: 661 cctggaatatatccttgggattatgatgcaagaaactacataaatcagaaagttgaagta 720
|||| ||||||||||||| ||||||||| || | |||||| |||| |||||||||||
Sbjct: 790 tctggcatatatccttgggcttatgatgctagtacctacattcatcataaagttgaagtt 849
Query: 721 aagagtggaactcttacagaagagtatctgcagaaattagatgaggcacttgaggttgct 780
||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 850 aagagtggaactcttaccgaagagtatctgcagtcattagattaggcacttgaggttgct 909
Query: 781 gcgcgaaggtttaaacctgagttggtaatttataatgctggaactgacatcctagatggt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 gcgcgaaggtttaaacctgagttggtaatttataatgctggaactgacatcctagatggt 969
Query: 841 gatccattaggaaggttgaagatcagtcctgatggaattgctcttagagatgagaaagtt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 gatccattaggaaggttgaagatcagtcctgatggaattgctcttagagatgagaaagtt 1029
Query: 901 tttcggtttgctcgtgagaagaacattcctatagtcatgctcacttcaggtggatacatg 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 tttcggtttgctcgtgagaagaacattcctatagtcatgctcacttcaggtggatacatg 1089
Query: 961 aagtccagtgccagagtcattgcagattcaattgtcaatctctcnnnnnnntgcttgata 1020
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1090 aagtccagtgccagagtcattgcagattcaattgtcaatctctcattcaaatgcttgata 1149
Query: 1021 gaaaccagaggaggtccaaaggcttag 1047
|||||| |||||||||| |||||||||
Sbjct: 1150 gaaacccgaggaggtcccaaggcttag 1176
>gnl|LJGI|BP069598 similar to UniRef100_Q944K3 Cluster: Histone deacetylase 2; n=1;
Arabidopsis thaliana|Rep: Histone deacetylase 2 -
Arabidopsis thaliana (Mouse-ear cress), partial (7%)
Length = 478
Score = 163 bits (82), Expect = 3e-39
Identities = 96/103 (93%)
Strand = Plus / Minus
Query: 945 ttcaggtggatacatgaagtccagtgccagagtcattgcagattcaattgtcaatctctc 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ttcaggtggatacatgaagtccagtgccagagtcattgcagattcaattgtcaatctctc 163
Query: 1005 nnnnnnntgcttgatagaaaccagaggaggtccaaaggcttag 1047
||||||||||||||||||||||||||||||||||||
Sbjct: 162 aaaaaaatgcttgatagaaaccagaggaggtccaaaggcttag 120