Miyakogusa Predicted Gene

Lj5g3v0380130.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v0380130.1 tr|A9PFA7|A9PFA7_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_823661 PE=2
SV=1,55.56,5e-19,POLLEN SPECIFIC PROTEIN SF21,Pollen specific protein
SF21; N-MYC DOWNSTREAM REGULATED,Ndr; Ndr,Ndr,CUFF.52899.1
         (241 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC66897 similar to UniRef100_A7P4I7 Cluster: Chromosome...   256   5e-68
gnl|LJGI|TC58490 similar to UniRef100_A7P4I7 Cluster: Chromosome...   111   2e-24
gnl|LJGI|TC59830 similar to UniRef100_A7PEA8 Cluster: Chromosome...    56   1e-07

>gnl|LJGI|TC66897 similar to UniRef100_A7P4I7 Cluster: Chromosome chr4 scaffold_6,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr4 scaffold_6, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (42%)
          Length = 1035

 Score =  256 bits (129), Expect = 5e-68
 Identities = 201/225 (89%)
 Strand = Plus / Plus

                                                                       
Query: 17  aggttcaagaatgtgggtcaatggtaacagaggagcaaccccatgctatgttaataccaa 76
           |||||||||  |||||||| |||||||||||||||||||||||||| ||| || ||||||
Sbjct: 225 aggttcaagcttgtgggtcgatggtaacagaggagcaaccccatgcgatgctagtaccaa 284

                                                                       
Query: 77  tagagtactttctcatgggatatggcttgtacaggtcatccaagatgagtgtcagcccta 136
           | ||||||||||||||||||||||| ||||| ||  |||||||  | ||||| ||||| |
Sbjct: 285 tggagtactttctcatgggatatggtttgtatagaccatccaaactaagtgttagcccaa 344

                                                                       
Query: 137 gaagccccttgagtccgtcttgcatttcccctgagctttattcaccagagagtatgggtt 196
           |||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 345 gaagtcccttgagtccatcttgcatttctcctgagctttattcaccagagagtatgggtt 404

                                                        
Query: 197 tgaaattgaaaccaataaagacaagaatttctatggaaatttagt 241
           |||||||||||||||| || ||| ||||||||  |||||||||||
Sbjct: 405 tgaaattgaaaccaattaaaacacgaatttctgcggaaatttagt 449


>gnl|LJGI|TC58490 similar to UniRef100_A7P4I7 Cluster: Chromosome chr4 scaffold_6,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr4 scaffold_6, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (82%)
          Length = 1224

 Score =  111 bits (56), Expect = 2e-24
 Identities = 77/84 (91%)
 Strand = Plus / Plus

                                                                       
Query: 17  aggttcaagaatgtgggtcaatggtaacagaggagcaaccccatgctatgttaataccaa 76
           |||||||||  |||||||| |||||||||||||||||||||||||| ||| || ||||||
Sbjct: 837 aggttcaagcttgtgggtcgatggtaacagaggagcaaccccatgcgatgctagtaccaa 896

                                   
Query: 77  tagagtactttctcatgggatatg 100
           | ||||||||||||||||||||||
Sbjct: 897 tggagtactttctcatgggatatg 920


>gnl|LJGI|TC59830 similar to UniRef100_A7PEA8 Cluster: Chromosome chr11 scaffold_13,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr11 scaffold_13, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (95%)
          Length = 1488

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 70/84 (83%)
 Strand = Plus / Plus

                                                                        
Query: 28   tgtgggtcaatggtaacagaggagcaaccccatgctatgttaataccaatagagtacttt 87
            ||||| |||||||| ||||| || || || ||||| ||| | |||||  | |||||||||
Sbjct: 972  tgtggatcaatggttacagaagaacagccacatgcaatgctgatacctttggagtacttt 1031

                                    
Query: 88   ctcatgggatatggcttgtacagg 111
            |||||||| ||||| |||||||||
Sbjct: 1032 ctcatggggtatgggttgtacagg 1055