Miyakogusa Predicted Gene
- Lj5g3v0310290.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0310290.1 Non Chatacterized Hit- tr|J3MCS6|J3MCS6_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB06G1,39.36,0.0000000000001,no description,Zinc finger, LIM-type;
LIM_DOMAIN_2,Zinc finger, LIM-type; LIM_DOMAIN_1,Zinc finger,
,CUFF.53314.1
(591 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58048 similar to UniRef100_Q59HI2 Cluster: Transcript... 1172 0.0
gnl|LJGI|TC65692 similar to UniRef100_Q59HI2 Cluster: Transcript... 963 0.0
>gnl|LJGI|TC58048 similar to UniRef100_Q59HI2 Cluster: Transcription factor lim1;
n=2; Eucalyptus|Rep: Transcription factor lim1 -
Eucalyptus camaldulensis (River red gum), partial (96%)
Length = 1024
Score = 1172 bits (591), Expect = 0.0
Identities = 591/591 (100%)
Strand = Plus / Plus
Query: 1 atggcatttgcaggaacaacccagaagtgtatggcttgtgacaaaacagtttatctggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 atggcatttgcaggaacaacccagaagtgtatggcttgtgacaaaacagtttatctggtt 217
Query: 61 gataagttgactgcggataaccgagtgttccacaaagcttgcttcagatgccaccactgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gataagttgactgcggataaccgagtgttccacaaagcttgcttcagatgccaccactgc 277
Query: 121 aaaggaaccctcaagctcagcaactacaactcttttgagggagttctttattgcaggcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aaaggaaccctcaagctcagcaactacaactcttttgagggagttctttattgcaggcca 337
Query: 181 cacttcgatcaactgttcaaaagaactggtagccttgacaaaagctttgaagggacacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cacttcgatcaactgttcaaaagaactggtagccttgacaaaagctttgaagggacacca 397
Query: 241 aaagttgccaaaccggaaagaaatattgataatgagaaacctgcagcagccaaagtctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aaagttgccaaaccggaaagaaatattgataatgagaaacctgcagcagccaaagtctca 457
Query: 301 agcatgtttggtggaaccagggataaatgtgcaggttgtcagaaaacggtgtatcctact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agcatgtttggtggaaccagggataaatgtgcaggttgtcagaaaacggtgtatcctact 517
Query: 361 gagaaggttactgtgaatggaactccttaccacaagagttgtttcaaatgctgccatgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gagaaggttactgtgaatggaactccttaccacaagagttgtttcaaatgctgccatgga 577
Query: 421 ggttgtgttatcagtccttccaattacatagcacacgagggaaaactctactgcaaacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ggttgtgttatcagtccttccaattacatagcacacgagggaaaactctactgcaaacac 637
Query: 481 caccacatccaactgattaaggagaagggaaatttaagccagctggagggtgaccatgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 caccacatccaactgattaaggagaagggaaatttaagccagctggagggtgaccatgag 697
Query: 541 aagaatgtagtgcaaggggaaattaatggtgacaaagttgcggcttaaaca 591
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aagaatgtagtgcaaggggaaattaatggtgacaaagttgcggcttaaaca 748
>gnl|LJGI|TC65692 similar to UniRef100_Q59HI2 Cluster: Transcription factor lim1;
n=2; Eucalyptus|Rep: Transcription factor lim1 -
Eucalyptus camaldulensis (River red gum), partial (89%)
Length = 702
Score = 963 bits (486), Expect = 0.0
Identities = 499/502 (99%), Gaps = 1/502 (0%)
Strand = Plus / Plus
Query: 1 atggcatttgcaggaacaacccagaagtgtatggcttgtgacaaaacagtttatctggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 atggcatttgcaggaacaacccagaagtgtatggcttgtgacaaaacagtttatctggtt 257
Query: 61 gataagttgactgcggataaccgagtgttccacaaagcttgcttcagatgccaccactgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gataagttgactgcggataaccgagtgttccacaaagcttgcttcagatgccaccactgc 317
Query: 121 aaaggaaccctcaagctcagcaactacaactcttttgagggagttctttattgcaggcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaaggaaccctcaagctcagcaactacaactcttttgagggagttctttattgcaggcca 377
Query: 181 cacttcgatcaactgttcaaaagaactggtagccttgacaaaagctttgaagggacacca 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cacttcgatcaactgctcaaaagaactggtagccttgacaaaagctttgaagggacacca 437
Query: 241 aaagttgccaaaccggaaagaaatattgataatgagaaacctgcagcagccaaagtctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaagttgccaaaccggaaagaaatattgataatgagaaacctgcagcagccaaagtctca 497
Query: 301 agcatgtttggtggaaccagggataaatgtgcaggttgtcagaaaacggtgtatcctact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agcatgtttggtggaaccagggataaatgtgcaggttgtcagaaaacggtgtatcctact 557
Query: 361 gagaaggttactgtgaatggaactccttaccacaagagttgtttcaaatgctgccat-gg 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 558 gagaaagttactgtgaatggaactccttaccacaagagttgtttcaaatgctgccatggg 617
Query: 420 aggttgtgttatcagtccttccaattacatagcacacgagggaaaactctactgcaaaca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aggttgtgttatcagtccttccaattacatagcacacgagggaaaactctactgcaaaca 677
Query: 480 ccaccacatccaactgattaag 501
||||||||||||||||||||||
Sbjct: 678 ccaccacatccaactgattaag 699