Miyakogusa Predicted Gene
- Lj5g3v0308670.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0308670.1 tr|P93166|P93166_SOYBN SCOF-1 OS=Glycine max
GN=scof-1 PE=2 SV=1,67.46,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; zf-C2H2_6,NULL; seg,NULL; ZINC_FINGER_C2H2_1,Zinc
f,CUFF.52806.1
(720 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC72860 homologue to UniRef100_P93166 Cluster: SCOF-1; ... 1419 0.0
gnl|LJGI|TC58912 similar to UniRef100_A7NU80 Cluster: Chromosome... 107 1e-22
gnl|LJGI|BW617683 similar to UniRef100_Q53EI9 Cluster: Zinc fing... 84 1e-15
gnl|LJGI|TC73624 similar to UniRef100_Q42423 Cluster: Zinc finge... 84 1e-15
gnl|LJGI|TC78040 similar to UniRef100_A7NU80 Cluster: Chromosome... 76 3e-13
gnl|LJGI|BW597501 similar to UniRef100_P93166 Cluster: SCOF-1; n... 60 2e-08
>gnl|LJGI|TC72860 homologue to UniRef100_P93166 Cluster: SCOF-1; n=1; Glycine
max|Rep: SCOF-1 - Glycine max (Soybean), partial (72%)
Length = 1161
Score = 1419 bits (716), Expect = 0.0
Identities = 719/720 (99%)
Strand = Plus / Plus
Query: 1 atggctatggaagccctcaactcacccaccaccaccgccccatccttcacgttcaacgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 atggctatggaagccctcaactcacccaccaccaccgccccatccttcacgttcaacgac 202
Query: 61 cacccaaccctccgtcacccggcggagccgtgggcaaaacggaaacgctccaagcgatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cacccaaccctccgtcacccggcggagccgtgggcaaaacggaaacgctccaagcgatct 262
Query: 121 cgttcatgctccgaggaagagtacctcgctctctgcctcatcatgctcgctcgcggcggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cgttcatgctccgaggaagagtacctcgctctctgcctcatcatgctcgctcgcggcggc 322
Query: 181 gccgccaccaccactgccacccctccgctgcaaccggcaaccgctccttccggttcctcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gccgccaccaccactgccacccctccgctgcaaccggcaaccgctccttccggttcctcc 382
Query: 241 aggctcagctacaagtgctccgtgtgcgacaaggccttcccttcctaccaagcgctcggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aggctcagctacaagtgctccgtgtgcgacaaggccttcccttcctaccaagcgctcggc 442
Query: 301 ggacacaaggccagccaccgcaaacactccggcggcgggggtgaagatcattccgctggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggacacaaggccagccaccgcaaacactccggcggcgggggtgaagatcattccgctggc 502
Query: 361 gccacctcctccgccgttgccaccaccacaagttctgctaacaccggaagtggaggtaag 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gccacctcctctgccgttgccaccaccacaagttctgctaacaccggaagtggaggtaag 562
Query: 421 gctcatgagtgttccatctgccacaaatccttccccaccggccaggccttaggaggacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gctcatgagtgttccatctgccacaaatccttccccaccggccaggccttaggaggacac 622
Query: 481 aagcgttgccactatgaaggtggtggtgggagcagcagcgccaccgcgtcagaaggtgtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aagcgttgccactatgaaggtggtggtgggagcagcagcgccaccgcgtcagaaggtgtt 682
Query: 541 ggatccacccacaccgtgagccacagccaccaccgtgacttcgatctgaacatacccgct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggatccacccacaccgtgagccacagccaccaccgtgacttcgatctgaacatacccgct 742
Query: 601 ctgccggagtttccaagcaccaaggccggagaagacgaggttgagagccctcaccctgtg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctgccggagtttccaagcaccaaggccggagaagacgaggttgagagccctcaccctgtg 802
Query: 661 atgaagaagaagcaacgtgttttcatgatacccaagatcgaaatccctcaactccattga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 atgaagaagaagcaacgtgttttcatgatacccaagatcgaaatccctcaactccattga 862
>gnl|LJGI|TC58912 similar to UniRef100_A7NU80 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (66%)
Length = 1015
Score = 107 bits (54), Expect = 1e-22
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 428 agtgttccatctgccacaaatccttccccaccggccaggccttaggaggacacaagcgtt 487
|||| ||||||||||| ||||||||||| || || |||||||| ||||||||||||||||
Sbjct: 534 agtgctccatctgccagaaatccttccctacaggacaggccttgggaggacacaagcgtt 593
Query: 488 gccactatgaaggtggtggtgg 509
||||||||||||| ||||||||
Sbjct: 594 gccactatgaaggcggtggtgg 615
Score = 83.8 bits (42), Expect = 1e-15
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 133 gaggaagagtacctcgctctctgcctcatcatgctcgctcgcggcggcgccgcc 186
||||||||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct: 263 gaggaagagtatctcgctctctgcctcatcatgctcgctcgcggcagcaccgcc 316
Score = 79.8 bits (40), Expect = 2e-14
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 243 gctcagctacaagtgctccgtgtgcgacaaggccttcccttcctaccaagcgctcggcgg 302
|||||| ||||||||||| || ||||| || ||||||| || |||||||| || |||||
Sbjct: 367 gctcagttacaagtgctctgtctgcgaaaaaaccttcccctcttaccaagcccttggcgg 426
Query: 303 acacaaggccagccaccgcaaacactccggcg 334
|||||||||||||||||| |||| | ||||||
Sbjct: 427 acacaaggccagccaccggaaactcgccggcg 458
>gnl|LJGI|BW617683 similar to UniRef100_Q53EI9 Cluster: Zinc finger protein; n=1;
Medicago truncatula|Rep: Zinc finger protein - Medicago
truncatula (Barrel medic), partial (25%)
Length = 494
Score = 83.8 bits (42), Expect = 1e-15
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 133 gaggaagagtacctcgctctctgcctcatcatgctcgctcgcggcggcgccgcc 186
||||||||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct: 240 gaggaagagtatctcgctctctgcctcatcatgctcgctcgcggcagcaccgcc 293
Score = 67.9 bits (34), Expect = 8e-11
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 243 gctcagctacaagtgctccgtgtgcgacaaggccttcccttcctaccaagcgctcggcgg 302
|||||| ||||||||||| || ||||| || ||||||| || |||||||| || |||||
Sbjct: 344 gctcagttacaagtgctctgtctgcgaaaaaaccttcccctcttaccaagcccttggcgg 403
Query: 303 acacaaggccagcc 316
||||||||||||||
Sbjct: 404 acacaaggccagcc 417
>gnl|LJGI|TC73624 similar to UniRef100_Q42423 Cluster: Zinc finger protein; n=1;
Arabidopsis thaliana|Rep: Zinc finger protein -
Arabidopsis thaliana (Mouse-ear cress), partial (25%)
Length = 488
Score = 83.8 bits (42), Expect = 1e-15
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 133 gaggaagagtacctcgctctctgcctcatcatgctcgctcgcggcggcgccgcc 186
||||||||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct: 276 gaggaagagtatctcgctctctgcctcatcatgctcgctcgcggcagcaccgcc 329
>gnl|LJGI|TC78040 similar to UniRef100_A7NU80 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (55%)
Length = 1178
Score = 75.8 bits (38), Expect = 3e-13
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 251 acaagtgctccgtgtgcgacaaggccttcccttcctaccaagcgctcggcggacacaagg 310
|||||||| |||||| |||||||| |||||||| |||||||| |||||||| ||||| |
Sbjct: 389 acaagtgcagcgtgtgtgacaaggcgttcccttcttaccaagcactcggcggccacaaag 448
Query: 311 ccagccaccgcaaa 324
| ||||||||||||
Sbjct: 449 caagccaccgcaaa 462
Score = 63.9 bits (32), Expect = 1e-09
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 136 gaagagtacctcgctctctgcctcatcatgct 167
||||||||||||||||||||||||||||||||
Sbjct: 226 gaagagtacctcgctctctgcctcatcatgct 257
>gnl|LJGI|BW597501 similar to UniRef100_P93166 Cluster: SCOF-1; n=1; Glycine max|Rep:
SCOF-1 - Glycine max (Soybean), partial (18%)
Length = 480
Score = 60.0 bits (30), Expect = 2e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 136 gaagagtacctcgctctctgcctcatcatgctcgctcgcggc 177
|||||||| |||||||||||||||||| ||||| ||||||||
Sbjct: 255 gaagagtatctcgctctctgcctcatcgtgctctctcgcggc 296