Miyakogusa Predicted Gene
- Lj5g3v0308500.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0308500.1 tr|I3S194|I3S194_LOTJA 40S ribosomal protein S24
OS=Lotus japonicus PE=2 SV=1,96.35,0,Ribosomal proteins S24e, L23 and
L15e,Ribosomal protein L23/L15e core domain; 40S RIBOSOMAL PROTEIN
,CUFF.52826.1
(414 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58978 homologue to UniRef100_A5BH65 Cluster: 40S ribo... 821 0.0
gnl|LJGI|TC82740 homologue to UniRef100_A5BH65 Cluster: 40S ribo... 565 e-161
gnl|LJGI|TC63686 similar to UniRef100_A5BH65 Cluster: 40S riboso... 488 e-137
gnl|LJGI|TC62231 similar to UniRef100_A5BH65 Cluster: 40S riboso... 480 e-135
gnl|LJGI|BP034952 homologue to UniRef100_A7PUB7 Cluster: 40S rib... 88 5e-17
gnl|LJGI|CN825005 similar to UniRef100_A0A3A0 Cluster: 40S ribos... 84 8e-16
>gnl|LJGI|TC58978 homologue to UniRef100_A5BH65 Cluster: 40S ribosomal protein S24;
n=1; Vitis vinifera|Rep: 40S ribosomal protein S24 -
Vitis vinifera (Grape), complete
Length = 797
Score = 821 bits (414), Expect = 0.0
Identities = 414/414 (100%)
Strand = Plus / Plus
Query: 1 atggctgacaaagctgtcaccatccgaaccaggaagttcatgaccaacaggcttctctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 atggctgacaaagctgtcaccatccgaaccaggaagttcatgaccaacaggcttctctcc 147
Query: 61 aggaagcaattcattgttgatgttcttcatcctgggagggctaatgtgtccaaggctgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 aggaagcaattcattgttgatgttcttcatcctgggagggctaatgtgtccaaggctgag 207
Query: 121 cttaaggaaaagttggcaaggttgtatgatgtgaaggaccctaacactgtatttgtcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 cttaaggaaaagttggcaaggttgtatgatgtgaaggaccctaacactgtatttgtcttc 267
Query: 181 aagtttcggacacattttggaggcggcaaatccactggtttcggtttgatctatgactca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aagtttcggacacattttggaggcggcaaatccactggtttcggtttgatctatgactca 327
Query: 241 ctcgaaaatgccaagaagtatgagcctaagtacagacttatcaggaatggtcttgacact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctcgaaaatgccaagaagtatgagcctaagtacagacttatcaggaatggtcttgacact 387
Query: 301 aaggtagaaaagtcaaggaagcagttgaaggaaaggaagaacagagccaagaagatccgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaggtagaaaagtcaaggaagcagttgaaggaaaggaagaacagagccaagaagatccgg 447
Query: 361 ggtgtgaaaaagaccaaggctgctgatgctgccaaggcaggaaagaagaaatga 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggtgtgaaaaagaccaaggctgctgatgctgccaaggcaggaaagaagaaatga 501
>gnl|LJGI|TC82740 homologue to UniRef100_A5BH65 Cluster: 40S ribosomal protein S24;
n=1; Vitis vinifera|Rep: 40S ribosomal protein S24 -
Vitis vinifera (Grape), complete
Length = 1513
Score = 565 bits (285), Expect = e-161
Identities = 285/285 (100%)
Strand = Plus / Plus
Query: 1 atggctgacaaagctgtcaccatccgaaccaggaagttcatgaccaacaggcttctctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 atggctgacaaagctgtcaccatccgaaccaggaagttcatgaccaacaggcttctctcc 142
Query: 61 aggaagcaattcattgttgatgttcttcatcctgggagggctaatgtgtccaaggctgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 aggaagcaattcattgttgatgttcttcatcctgggagggctaatgtgtccaaggctgag 202
Query: 121 cttaaggaaaagttggcaaggttgtatgatgtgaaggaccctaacactgtatttgtcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cttaaggaaaagttggcaaggttgtatgatgtgaaggaccctaacactgtatttgtcttc 262
Query: 181 aagtttcggacacattttggaggcggcaaatccactggtttcggtttgatctatgactca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aagtttcggacacattttggaggcggcaaatccactggtttcggtttgatctatgactca 322
Query: 241 ctcgaaaatgccaagaagtatgagcctaagtacagacttatcagg 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctcgaaaatgccaagaagtatgagcctaagtacagacttatcagg 367
Score = 258 bits (130), Expect = 2e-68
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 285 gaatggtcttgacactaaggtagaaaagtcaaggaagcagttgaaggaaaggaagaacag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1232 gaatggtcttgacactaaggtagaaaagtcaaggaagcagttgaaggaaaggaagaacag 1291
Query: 345 agccaagaagatccggggtgtgaaaaagaccaaggctgctgatgctgccaaggcaggaaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1292 agccaagaagatccggggtgtgaaaaagaccaaggctgctgatgctgccaaggcaggaaa 1351
Query: 405 gaagaaatga 414
||||||||||
Sbjct: 1352 gaagaaatga 1361
Score = 77.8 bits (39), Expect = 5e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 289 ggtcttgacactaaggtagaaaagtcaaggaagcagttgaaggaaaggaagaacagagc 347
|||||||||||||| ||||||||||||||||| || ||| |||| ||||||||||||||
Sbjct: 923 ggtcttgacactaaagtagaaaagtcaaggaaacaattgtaggagaggaagaacagagc 981
>gnl|LJGI|TC63686 similar to UniRef100_A5BH65 Cluster: 40S ribosomal protein S24;
n=1; Vitis vinifera|Rep: 40S ribosomal protein S24 -
Vitis vinifera (Grape), complete
Length = 660
Score = 488 bits (246), Expect = e-137
Identities = 372/414 (89%)
Strand = Plus / Plus
Query: 1 atggctgacaaagctgtcaccatccgaaccaggaagttcatgaccaacaggcttctctcc 60
||||| |||||||| || |||||||||||||||||||||||||||||||| || ||||||
Sbjct: 48 atggcggacaaagcagtgaccatccgaaccaggaagttcatgaccaacagactcctctcc 107
Query: 61 aggaagcaattcattgttgatgttcttcatcctgggagggctaatgtgtccaaggctgag 120
|||||||||||||| |||||||| |||||||| |||||||| ||||| || ||| |||||
Sbjct: 108 aggaagcaattcatagttgatgtgcttcatccagggagggcaaatgtttcaaagactgag 167
Query: 121 cttaaggaaaagttggcaaggttgtatgatgtgaaggaccctaacactgtatttgtcttc 180
|||||||||||| |||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct: 168 cttaaggaaaagctggcaaggttatatgatgtgaaggatcctaacactgtgtttgtcttc 227
Query: 181 aagtttcggacacattttggaggcggcaaatccactggtttcggtttgatctatgactca 240
|| || || |||||||||||||| |||||||||||||| || |||||||||||||| |||
Sbjct: 228 aaattccgaacacattttggaggtggcaaatccactggctttggtttgatctatgattca 287
Query: 241 ctcgaaaatgccaagaagtatgagcctaagtacagacttatcaggaatggtcttgacact 300
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 288 cttgaaaatgccaagaagtatgagcccaagtacaggcttatcaggaatggtcttgacact 347
Query: 301 aaggtagaaaagtcaaggaagcagttgaaggaaaggaagaacagagccaagaagatccgg 360
||||| ||||||||||||||||| |||||||| || ||||||||||| |||||||| ||
Sbjct: 348 aaggttgaaaagtcaaggaagcaattgaaggagagaaagaacagagcgaagaagattcgc 407
Query: 361 ggtgtgaaaaagaccaaggctgctgatgctgccaaggcaggaaagaagaaatga 414
|| || || ||||| || ||| ||||||||||||||| ||||| |||||||||
Sbjct: 408 ggagtaaagaagacgaaagcttctgatgctgccaagggtggaaaaaagaaatga 461
>gnl|LJGI|TC62231 similar to UniRef100_A5BH65 Cluster: 40S ribosomal protein S24;
n=1; Vitis vinifera|Rep: 40S ribosomal protein S24 -
Vitis vinifera (Grape), complete
Length = 714
Score = 480 bits (242), Expect = e-135
Identities = 371/414 (89%)
Strand = Plus / Plus
Query: 1 atggctgacaaagctgtcaccatccgaaccaggaagttcatgaccaacaggcttctctcc 60
||||| |||||||| ||||||||||||||| | ||||||||||||||| | || ||||||
Sbjct: 84 atggcggacaaagcagtcaccatccgaacccgcaagttcatgaccaaccgactcctctcc 143
Query: 61 aggaagcaattcattgttgatgttcttcatcctgggagggctaatgtgtccaaggctgag 120
|||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||||
Sbjct: 144 aggaagcaattcattgttgatgttcttcatccagggagggcaaatgtttcaaaggctgag 203
Query: 121 cttaaggaaaagttggcaaggttgtatgatgtgaaggaccctaacactgtatttgtcttc 180
|||||||| ||| |||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 204 cttaaggagaagctggcaaggctgtatgatgtgaaggaccctaacactgtgtttgtcttc 263
Query: 181 aagtttcggacacattttggaggcggcaaatccactggtttcggtttgatctatgactca 240
|| || ||||||||||||||||| |||||||||||||| || || ||||||||||| ||
Sbjct: 264 aaattccggacacattttggaggtggcaaatccactggctttgggttgatctatgattcg 323
Query: 241 ctcgaaaatgccaagaagtatgagcctaagtacagacttatcaggaatggtcttgacact 300
|| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 324 cttgaaaatgctaagaagtatgagcccaagtacaggcttatcaggaatggtcttgacact 383
Query: 301 aaggtagaaaagtcaaggaagcagttgaaggaaaggaagaacagagccaagaagatccgg 360
|| || ||||||||||||||||| ||||||| || ||||||||||| ||||| |||||
Sbjct: 384 aaagttgaaaagtcaaggaagcaactgaaggagagaaagaacagagctaagaaaatccga 443
Query: 361 ggtgtgaaaaagaccaaggctgctgatgctgccaaggcaggaaagaagaaatga 414
|| ||||| ||||| |||||| ||||||||||||||| ||||| |||||||||
Sbjct: 444 ggagtgaagaagacaaaggcttctgatgctgccaagggtggaaaaaagaaatga 497
>gnl|LJGI|BP034952 homologue to UniRef100_A7PUB7 Cluster: 40S ribosomal protein S24;
n=1; Vitis vinifera|Rep: 40S ribosomal protein S24 -
Vitis vinifera (Grape), partial (31%)
Length = 437
Score = 87.7 bits (44), Expect = 5e-17
Identities = 74/84 (88%)
Strand = Plus / Minus
Query: 285 gaatggtcttgacactaaggtagaaaagtcaaggaagcagttgaaggaaaggaagaacag 344
|||||||||||||||||| || ||||||||||||||||| ||||||| || ||||||||
Sbjct: 313 gaatggtcttgacactaaagttgaaaagtcaaggaagcaactgaaggagagaaagaacag 254
Query: 345 agccaagaagatccggggtgtgaa 368
||| ||||| ||||| || |||||
Sbjct: 253 agctaagaaaatccgaggagtgaa 230
Score = 56.0 bits (28), Expect = 2e-07
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 371 agaccaaggctgctgatgctgccaaggcaggaaagaagaaatga 414
||||||||||| ||||||||||||||| ||||| |||||||||
Sbjct: 143 agaccaaggcttctgatgctgccaagggtggaaaaaagaaatga 100
>gnl|LJGI|CN825005 similar to UniRef100_A0A3A0 Cluster: 40S ribosomal protein S24;
n=1; Artemisia annua|Rep: 40S ribosomal protein S24 -
Artemisia annua (Sweet wormwood), partial (21%)
Length = 665
Score = 83.8 bits (42), Expect = 8e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 226 ttgatctatgactcactcgaaaatgccaagaagtatgagcctaagtacagacttatca 283
||||||||||| ||||| ||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 599 ttgatctatgattcacttgaaaatgccaagaagtatgagcccaagtacagatttatca 656