Miyakogusa Predicted Gene
- Lj5g3v0308380.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0308380.1 tr|Q60DE9|Q60DE9_ORYSJ Os05g0443700 protein
OS=Oryza sativa subsp. japonica GN=B1110B01.19 PE=2
SV=1,46.58,2e-18,t-snare proteins,t-SNARE; seg,NULL;
Syntaxin-6_N,Syntaxin 6, N-terminal; no description,NULL,CUFF.52789.1
(1020 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS337903 similar to UniRef100_Q2HRK3 Cluster: T-snare; ... 771 0.0
gnl|LJGI|TC74668 similar to UniRef100_Q2HRK3 Cluster: T-snare; n... 341 5e-93
gnl|LJGI|TC62118 similar to UniRef100_Q2HRK3 Cluster: T-snare; n... 119 4e-26
gnl|LJGI|GO025100 similar to UniRef100_Q2HRK3 Cluster: T-snare; ... 111 9e-24
>gnl|LJGI|FS337903 similar to UniRef100_Q2HRK3 Cluster: T-snare; n=1; Medicago
truncatula|Rep: T-snare - Medicago truncatula (Barrel
medic), partial (42%)
Length = 701
Score = 771 bits (389), Expect = 0.0
Identities = 409/418 (97%)
Strand = Plus / Plus
Query: 1 atggcgtcgagtttcgaccggtgggagaaagatccnnnnnnnaacgctgctgaagaagtt 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 284 atggcgtcgagtttcgaccggtgggagaaagatcctttttttaacgctgctgaagaagtt 343
Query: 61 caggaatctgcagacaggatggattctgcatataggacttggctacatgcaacaaaagat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 caggaatctgcagacaggatggattctgcatataggacttggctacatgcaacaaaagag 403
Query: 121 acttcgagtatgtggaactccgatgaactccgcagagatctacaaactacccttggcact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 acttcgagtatgtggaactccgatgaactccgcagagatctacaaactacccttggcact 463
Query: 181 gctaagtggcagttagaggaatttgaacgagcagcgaggttaaattatagccggacctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gctaagtggcagttagaggaatttgaacgagcagcgaggttaaattatagccggacctca 523
Query: 241 ggtgaagcaagaactaggcaccaagattttatcactgccattgaagataagataacaaaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 524 ggtgaagcaagaactaggcaccaagattttatcactgccattgaagataagagaacaaaa 583
Query: 301 gttgagcatttgttacacgaatcatccactacgggaagtaaagcgtccatgccttggata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gttgagcatttgttacacgaatcatccactacgggaagtaaagcgtccatgccttggata 643
Query: 361 catttggatgaaggtgaacaagatgagcttgcttcgtttctttcaggaatgccagcag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 catttggatgaaggtgaacaagatgagcttgcttcgtttctttcaggaatgccagcag 701
>gnl|LJGI|TC74668 similar to UniRef100_Q2HRK3 Cluster: T-snare; n=1; Medicago
truncatula|Rep: T-snare - Medicago truncatula (Barrel
medic), partial (15%)
Length = 555
Score = 341 bits (172), Expect = 5e-93
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 849 taagagttgcgatgaatgctatgacaagaacctctatggatggtatggggctattcggag 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taagagttgcgatgaatgctatgacaagaacctctatggatggtatggggctattcggag 60
Query: 909 acagcttcaaagatctcaataccaaatgcaatacagccagcctgttcgaataaccgtttc 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acagcttcaaagatctcaataccaaatgcaatacagccagcctgttcgaataaccgtttc 120
Query: 969 gattgttgttctactttgtttgatcgttttgattgcatttcgcacaatgtag 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gattgttgttctactttgtttgatcgttttgattgcatttcgcacaatgtag 172
>gnl|LJGI|TC62118 similar to UniRef100_Q2HRK3 Cluster: T-snare; n=1; Medicago
truncatula|Rep: T-snare - Medicago truncatula (Barrel
medic), partial (33%)
Length = 780
Score = 119 bits (60), Expect = 4e-26
Identities = 170/209 (81%)
Strand = Plus / Plus
Query: 1 atggcgtcgagtttcgaccggtgggagaaagatccnnnnnnnaacgctgctgaagaagtt 60
|||||| ||||||| ||||||||||| |||||||| ||||| || |||||||||
Sbjct: 314 atggcgacgagttttgaccggtgggaaaaagatcctttctttaacgccgccgaagaagtt 373
Query: 61 caggaatctgcagacaggatggattctgcatataggacttggctacatgcaacaaaagat 120
||||||||||||||||||||||| |||||||||||||| || | || || | | ||||
Sbjct: 374 caggaatctgcagacaggatggagtctgcatataggacatgtattcacgcgaagagagat 433
Query: 121 acttcgagtatgtggaactccgatgaactccgcagagatctacaaactacccttggcact 180
| || | ||||||||| ||||| ||||| ||||||| || ||| |||||||||||
Sbjct: 434 ccgtcctgcccgtggaactctgatgagctccgtcgagatctgcatactgcccttggcact 493
Query: 181 gctaagtggcagttagaggaatttgaacg 209
||||| ||||||||||| || ||||||||
Sbjct: 494 gctaaatggcagttagatgagtttgaacg 522
>gnl|LJGI|GO025100 similar to UniRef100_Q2HRK3 Cluster: T-snare; n=1; Medicago
truncatula|Rep: T-snare - Medicago truncatula (Barrel
medic), partial (23%)
Length = 694
Score = 111 bits (56), Expect = 9e-24
Identities = 169/209 (80%)
Strand = Plus / Plus
Query: 1 atggcgtcgagtttcgaccggtgggagaaagatccnnnnnnnaacgctgctgaagaagtt 60
|||||| ||||||| ||||||||||| |||||||| ||||| || |||||||||
Sbjct: 390 atggcgacgagttttgaccggtgggaaaaagatcctttctttaacgccgccgaagaagtt 449
Query: 61 caggaatctgcagacaggatggattctgcatataggacttggctacatgcaacaaaagat 120
||||||||||||||||||||||| |||||||||||||| || | || || | | ||||
Sbjct: 450 caggaatctgcagacaggatggagtctgcatataggacatgtattcacgcgaagagagat 509
Query: 121 acttcgagtatgtggaactccgatgaactccgcagagatctacaaactacccttggcact 180
| || | |||||||| ||||| ||||| ||||||| || ||| |||||||||||
Sbjct: 510 ccgtcctgcccgtggaactttgatgagctccgtcgagatctgcatactgcccttggcact 569
Query: 181 gctaagtggcagttagaggaatttgaacg 209
||||| ||||||||||| || ||||||||
Sbjct: 570 gctaaatggcagttagatgagtttgaacg 598