Miyakogusa Predicted Gene
- Lj5g3v0218110.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0218110.1 Non Chatacterized Hit- tr|Q5JL26|Q5JL26_ORYSJ
Putative uncharacterized protein P0682B08.32 OS=Oryza ,40.12,9e-18,no
description,Tetratricopeptide-like helical; PCDC2 (PROGRAMMED CELL
DEATH PROTEIN
2)-RELATED,NULL;,NODE_41648_length_980_cov_119.596939.path2.1
(744 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC74260 similar to UniRef100_A7QP60 Cluster: Chromosome... 844 0.0
gnl|LJGI|TC71896 similar to UniRef100_A7QP60 Cluster: Chromosome... 444 e-124
gnl|LJGI|TC64668 similar to UniRef100_A7QP60 Cluster: Chromosome... 119 3e-26
>gnl|LJGI|TC74260 similar to UniRef100_A7QP60 Cluster: Chromosome chr1 scaffold_136,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_136, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (26%)
Length = 745
Score = 844 bits (426), Expect = 0.0
Identities = 464/480 (96%), Gaps = 15/480 (3%)
Strand = Plus / Plus
Query: 280 gaagcaaacgcccgggagctcgccgccgtgatgtccgccgcggatgctaggttgtcagcc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagcaaacgcccgggagctcgccgccgtgatgtccgccgcggatgctaggttgtcagcc 60
Query: 340 tccgacgccgctgtgagccggttggtgacatggagcctccacccgcagcaacggcactta 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tccgacgccgctgtgagccggttggtgacatggagcctccacccgcagcaacggcactta 120
Query: 400 ccgtcgggggcgccgctgctgagcgacttcgggtggaacgtgccggagccggagcctcac 459
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccgtcggtggcgccgctgctgagcgacttcgggtggaacgtgccggagccggagcctcac 180
Query: 460 ccggcgaaccggttcatgactgagtggttcgcggcgaaggatgatgttccagggccgggg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccggcgaaccggttcatgactgagtggttcgcggcgaaggatgatgttccagggccgggg 240
Query: 520 ttaagtctctgttcgcacatgggctgcggtcggccggagacgaggaatcgtgagttccgg 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttaagtctctgttcgcacatgggctgcggtcggccggagacgaggaatcgtgagttccgg 300
Query: 580 cggtgctcggtgtgcggcacggtgaactactgctcgcgcgcgtgtcaggcgctggattgg 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cggtgctcggtgtgcggcacggtgaactactgctcgcgcgcgtgtcaggcgctggattgg 360
Query: 640 aagctccggcacaaggtggagtgtgctgcccccatggagcggttgcttgatga------- 692
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagctccggcacaaggtggagtgtgctgcccccatggagcggttgcttgatgatgacggc 420
Query: 693 --------cggggaaggcgtcggtgacggcgaggtggaggttatggaggatagttagagc 744
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatgacgccggggaaggcgtcggtgacggcgaggtggaggttatggaggatagttagagc 480
>gnl|LJGI|TC71896 similar to UniRef100_A7QP60 Cluster: Chromosome chr1 scaffold_136,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_136, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (46%)
Length = 685
Score = 444 bits (224), Expect = e-124
Identities = 224/224 (100%)
Strand = Plus / Plus
Query: 1 atgattcggttctactgtttgcaaaacaggggaagcggcgcgtcgttgatggccaaggcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atgattcggttctactgtttgcaaaacaggggaagcggcgcgtcgttgatggccaaggcg 521
Query: 61 gcgattagctctcacgcgcgtgctctctactcgctcgcggtgattcagttcaacggcagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gcgattagctctcacgcgcgtgctctctactcgctcgcggtgattcagttcaacggcagc 581
Query: 121 ggagggaccaagagtgacaaggacctccgtgccggagtggcgctttgtgccagagcggcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ggagggaccaagagtgacaaggacctccgtgccggagtggcgctttgtgccagagcggcg 641
Query: 181 tttttaggacacatcgacgcgctgcgtgagattggccactgctt 224
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tttttaggacacatcgacgcgctgcgtgagattggccactgctt 685
>gnl|LJGI|TC64668 similar to UniRef100_A7QP60 Cluster: Chromosome chr1 scaffold_136,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_136, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (73%)
Length = 1382
Score = 119 bits (60), Expect = 3e-26
Identities = 87/96 (90%)
Strand = Plus / Plus
Query: 570 tgagttccggcggtgctcggtgtgcggcacggtgaactactgctcgcgcgcgtgtcaggc 629
||||||||||||||||||||| ||||| | |||||| ||||||||||| | |||||||||
Sbjct: 973 tgagttccggcggtgctcggtttgcgggaaggtgaattactgctcgcgggggtgtcaggc 1032
Query: 630 gctggattggaagctccggcacaaggtggagtgtgc 665
||||||||||||| | ||||||||| ||||||||||
Sbjct: 1033 gctggattggaagttgcggcacaagatggagtgtgc 1068