Miyakogusa Predicted Gene

Lj5g3v0218110.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v0218110.1 Non Chatacterized Hit- tr|Q5JL26|Q5JL26_ORYSJ
Putative uncharacterized protein P0682B08.32 OS=Oryza ,40.12,9e-18,no
description,Tetratricopeptide-like helical; PCDC2 (PROGRAMMED CELL
DEATH PROTEIN
2)-RELATED,NULL;,NODE_41648_length_980_cov_119.596939.path2.1
         (744 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC74260 similar to UniRef100_A7QP60 Cluster: Chromosome...   844   0.0  
gnl|LJGI|TC71896 similar to UniRef100_A7QP60 Cluster: Chromosome...   444   e-124
gnl|LJGI|TC64668 similar to UniRef100_A7QP60 Cluster: Chromosome...   119   3e-26

>gnl|LJGI|TC74260 similar to UniRef100_A7QP60 Cluster: Chromosome chr1 scaffold_136,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_136, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (26%)
          Length = 745

 Score =  844 bits (426), Expect = 0.0
 Identities = 464/480 (96%), Gaps = 15/480 (3%)
 Strand = Plus / Plus

                                                                       
Query: 280 gaagcaaacgcccgggagctcgccgccgtgatgtccgccgcggatgctaggttgtcagcc 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaagcaaacgcccgggagctcgccgccgtgatgtccgccgcggatgctaggttgtcagcc 60

                                                                       
Query: 340 tccgacgccgctgtgagccggttggtgacatggagcctccacccgcagcaacggcactta 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tccgacgccgctgtgagccggttggtgacatggagcctccacccgcagcaacggcactta 120

                                                                       
Query: 400 ccgtcgggggcgccgctgctgagcgacttcgggtggaacgtgccggagccggagcctcac 459
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccgtcggtggcgccgctgctgagcgacttcgggtggaacgtgccggagccggagcctcac 180

                                                                       
Query: 460 ccggcgaaccggttcatgactgagtggttcgcggcgaaggatgatgttccagggccgggg 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccggcgaaccggttcatgactgagtggttcgcggcgaaggatgatgttccagggccgggg 240

                                                                       
Query: 520 ttaagtctctgttcgcacatgggctgcggtcggccggagacgaggaatcgtgagttccgg 579
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttaagtctctgttcgcacatgggctgcggtcggccggagacgaggaatcgtgagttccgg 300

                                                                       
Query: 580 cggtgctcggtgtgcggcacggtgaactactgctcgcgcgcgtgtcaggcgctggattgg 639
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cggtgctcggtgtgcggcacggtgaactactgctcgcgcgcgtgtcaggcgctggattgg 360

                                                                       
Query: 640 aagctccggcacaaggtggagtgtgctgcccccatggagcggttgcttgatga------- 692
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 361 aagctccggcacaaggtggagtgtgctgcccccatggagcggttgcttgatgatgacggc 420

                                                                       
Query: 693 --------cggggaaggcgtcggtgacggcgaggtggaggttatggaggatagttagagc 744
                   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatgacgccggggaaggcgtcggtgacggcgaggtggaggttatggaggatagttagagc 480


>gnl|LJGI|TC71896 similar to UniRef100_A7QP60 Cluster: Chromosome chr1 scaffold_136,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_136, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (46%)
          Length = 685

 Score =  444 bits (224), Expect = e-124
 Identities = 224/224 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgattcggttctactgtttgcaaaacaggggaagcggcgcgtcgttgatggccaaggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atgattcggttctactgtttgcaaaacaggggaagcggcgcgtcgttgatggccaaggcg 521

                                                                       
Query: 61  gcgattagctctcacgcgcgtgctctctactcgctcgcggtgattcagttcaacggcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gcgattagctctcacgcgcgtgctctctactcgctcgcggtgattcagttcaacggcagc 581

                                                                       
Query: 121 ggagggaccaagagtgacaaggacctccgtgccggagtggcgctttgtgccagagcggcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ggagggaccaagagtgacaaggacctccgtgccggagtggcgctttgtgccagagcggcg 641

                                                       
Query: 181 tttttaggacacatcgacgcgctgcgtgagattggccactgctt 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tttttaggacacatcgacgcgctgcgtgagattggccactgctt 685


>gnl|LJGI|TC64668 similar to UniRef100_A7QP60 Cluster: Chromosome chr1 scaffold_136,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr1 scaffold_136, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (73%)
          Length = 1382

 Score =  119 bits (60), Expect = 3e-26
 Identities = 87/96 (90%)
 Strand = Plus / Plus

                                                                        
Query: 570  tgagttccggcggtgctcggtgtgcggcacggtgaactactgctcgcgcgcgtgtcaggc 629
            ||||||||||||||||||||| ||||| | |||||| ||||||||||| | |||||||||
Sbjct: 973  tgagttccggcggtgctcggtttgcgggaaggtgaattactgctcgcgggggtgtcaggc 1032

                                                
Query: 630  gctggattggaagctccggcacaaggtggagtgtgc 665
            ||||||||||||| | ||||||||| ||||||||||
Sbjct: 1033 gctggattggaagttgcggcacaagatggagtgtgc 1068