Miyakogusa Predicted Gene
- Lj5g3v0196830.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0196830.1 Non Chatacterized Hit- tr|B9S1E4|B9S1E4_RICCO
Auxin response factor, putative OS=Ricinus communis
GN,87.5,0,seg,NULL; AUX_IAA,AUX/IAA protein; CAD & PB1 domains,NULL;
FAMILY NOT NAMED,NULL; IAA_ARF,Aux/IAA-AR,TC76192.path2.1
(483 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC76192 similar to UniRef100_A7PFD6 Cluster: Chromosome... 957 0.0
gnl|LJGI|BP052829 155 3e-37
gnl|LJGI|TC81270 similar to UniRef100_A7NSY4 Cluster: Chromosome... 54 8e-07
>gnl|LJGI|TC76192 similar to UniRef100_A7PFD6 Cluster: Chromosome chr11 scaffold_14,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_14, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (15%)
Length = 1280
Score = 957 bits (483), Expect = 0.0
Identities = 483/483 (100%)
Strand = Plus / Plus
Query: 1 atggtttcacaaacatttggagtccctgatatgacctttaattcaattgattccacaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 atggtttcacaaacatttggagtccctgatatgacctttaattcaattgattccacaatc 75
Query: 61 gatgacagtagcttcttgaatggtgatccatggggtccacaaccagcaccgccaccacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 gatgacagtagcttcttgaatggtgatccatggggtccacaaccagcaccgccaccacca 135
Query: 121 ccagcacagtttcagcggatgaggacatataccaaggtatataaacggggagctgtggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ccagcacagtttcagcggatgaggacatataccaaggtatataaacggggagctgtggga 195
Query: 181 aggtccatcgatatagcacggtattcaggatatgaggagcttaaacaggatctagctcgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 aggtccatcgatatagcacggtattcaggatatgaggagcttaaacaggatctagctcgt 255
Query: 241 aggtttggcattgagggacaattggaggatcgacaaaggataggttggaaacttgtctat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aggtttggcattgagggacaattggaggatcgacaaaggataggttggaaacttgtctat 315
Query: 301 gtagatcatgagggtgatgttctactagtgggagatgacccttgggaggagtttgttaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gtagatcatgagggtgatgttctactagtgggagatgacccttgggaggagtttgttaac 375
Query: 361 tgtgtccgctgtattaaaatactttctccccaagaagtgcaacaaatgagtttggatgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgtgtccgctgtattaaaatactttctccccaagaagtgcaacaaatgagtttggatgga 435
Query: 421 gattttggcagtggtggccttccaaatcaagcctgtagcagctctgatggtgggaatact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gattttggcagtggtggccttccaaatcaagcctgtagcagctctgatggtgggaatact 495
Query: 481 taa 483
|||
Sbjct: 496 taa 498
>gnl|LJGI|BP052829
Length = 562
Score = 155 bits (78), Expect = 3e-37
Identities = 92/94 (97%), Gaps = 2/94 (2%)
Strand = Plus / Minus
Query: 262 ttggaggatcgacaaaggataggttggaaacttgtctatgtagatcatgagggtgatgtt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttggaggatcgacaaaggataggttggaaacttgtctatgtagatcatgagggtgatgtt 503
Query: 322 ctacta-gtgggagatgac-ccttgggaggagtt 353
|||||| |||||||||||| ||||||||||||||
Sbjct: 502 ctactatgtgggagatgacaccttgggaggagtt 469
>gnl|LJGI|TC81270 similar to UniRef100_A7NSY4 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 786
Score = 54.0 bits (27), Expect = 8e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 298 tatgtagatcatgagggtgatgttctactagtgggagatgacccttgggaggagtttgt 356
||||||||| ||||| ||||||||||||| || || ||||| |||||||| || |||||
Sbjct: 166 tatgtagattatgagagtgatgttctacttgtaggtgatgatccttgggaagaatttgt 224