Miyakogusa Predicted Gene

Lj5g3v0186710.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj5g3v0186710.1 Non Chatacterized Hit- tr|I3SGY5|I3SGY5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,SNARE-like,Longin-like domain; CLATHRIN COAT ASSEMBLY
PROTEIN AP17,NULL; CLATHRIN COAT ASSEMBLY PROT,CUFF.52634.1
         (408 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC59580 homologue to UniRef100_Q7X9R1 Cluster: Clathrin...   801   0.0  

>gnl|LJGI|TC59580 homologue to UniRef100_Q7X9R1 Cluster: Clathrin coat assembly
           protein; n=1; Gossypium barbadense|Rep: Clathrin coat
           assembly protein - Gossypium barbadense (Sea-island
           cotton) (Egyptian cotton), complete
          Length = 944

 Score =  801 bits (404), Expect = 0.0
 Identities = 407/408 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatccgattcattctgttgcagaatcgccaggggaagacccgtttagccaaatactac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 atgatccgattcattctgttgcagaatcgccaggggaagacccgtttagccaaatactac 213

                                                                       
Query: 61  gttcctctcgaggattccgagaagcacaaggtcgaatacgaggttcatcgcttagttgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gttcctctcgaggattccgagaagcacaaggtcgaatacgaggttcatcgcttagttgta 273

                                                                       
Query: 121 aacagagaccccaagtacaccaatttcgttgagtttcgtactcacaagataatatacagg 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 274 aacagagaccccaagtacaccaatttcgttgagtttcgtacccacaagataatatacagg 333

                                                                       
Query: 181 cgatatgctggcttgtttttctcgctctgtgttgacatcactgataatgagttggcttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cgatatgctggcttgtttttctcgctctgtgttgacatcactgataatgagttggcttat 393

                                                                       
Query: 241 ttagagtgcatccatttatttgtcgaaatattggatcacttctttagcaatgtgtgcgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttagagtgcatccatttatttgtcgaaatattggatcacttctttagcaatgtgtgcgag 453

                                                                       
Query: 301 ctggatttggtttttaacttccacaaggtctatcttatacttgatgaattcattctagcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ctggatttggtttttaacttccacaaggtctatcttatacttgatgaattcattctagcg 513

                                                           
Query: 361 ggtgaactgcaagaaactagcaagaaggctatcattgagagaatgggg 408
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggtgaactgcaagaaactagcaagaaggctatcattgagagaatgggg 561