Miyakogusa Predicted Gene
- Lj5g3v0186680.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0186680.1 Non Chatacterized Hit- tr|F6I100|F6I100_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,41.98,6e-18,seg,NULL; Skp1 dimerisation domain-like,SKP1
component, dimerisation; POZ domain,BTB/POZ fold; no de,CUFF.52628.1
(405 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69119 similar to UniRef100_Q9XF99 Cluster: Skp1; n=1;... 543 e-154
gnl|LJGI|TC61846 similar to UniRef100_Q68GS0 Cluster: SKP1; n=1;... 535 e-152
gnl|LJGI|BW597923 similar to UniRef100_Q155U3 Cluster: SKP1-like... 84 8e-16
gnl|LJGI|TC73061 homologue to UniRef100_Q155U3 Cluster: SKP1-lik... 84 8e-16
gnl|LJGI|TC58761 homologue to UniRef100_Q155U3 Cluster: SKP1-lik... 60 1e-08
>gnl|LJGI|TC69119 similar to UniRef100_Q9XF99 Cluster: Skp1; n=1; Medicago
sativa|Rep: Skp1 - Medicago sativa (Alfalfa), partial
(58%)
Length = 558
Score = 543 bits (274), Expect = e-154
Identities = 274/274 (100%)
Strand = Plus / Plus
Query: 1 atggcttcaacagcgaggaagatcaccctgaagagttccgatggtgcggccttcgaagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 atggcttcaacagcgaggaagatcaccctgaagagttccgatggtgcggccttcgaagtg 129
Query: 61 gaagaagcggtggtggcgcttcactcacagaccattaaggacatgatcaacgcccacagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gaagaagcggtggtggcgcttcactcacagaccattaaggacatgatcaacgcccacagc 189
Query: 121 ggcatcgtcgctctttccgatgtaaccggcaacatcctcgccaaagtgatccagtattgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ggcatcgtcgctctttccgatgtaaccggcaacatcctcgccaaagtgatccagtattgc 249
Query: 181 aacaagcacagttccggtagcgagaatgagctccggcaatgggatgctgatttcgtgaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aacaagcacagttccggtagcgagaatgagctccggcaatgggatgctgatttcgtgaag 309
Query: 241 gttgatcgggacacgctcttcgatctcctcaatg 274
||||||||||||||||||||||||||||||||||
Sbjct: 310 gttgatcgggacacgctcttcgatctcctcaatg 343
Score = 246 bits (124), Expect = 9e-65
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 274 gctgcaaacaatttgaagatcaagagccttttgaaccttattgttcataccgtagcacag 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gctgcaaacaatttgaagatcaagagccttttgaaccttattgttcataccgtagcacag 492
Query: 334 atgatgaagggtatgaatcctcaggaaatttgcgagttaacaatgagaatgagtggtttt 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atgatgaagggtatgaatcctcaggaaatttgcgagttaacaatgagaatgagtggtttt 552
Query: 394 agac 397
||||
Sbjct: 553 agac 556
>gnl|LJGI|TC61846 similar to UniRef100_Q68GS0 Cluster: SKP1; n=1; Nicotiana
tabacum|Rep: SKP1 - Nicotiana tabacum (Common tobacco),
partial (26%)
Length = 725
Score = 535 bits (270), Expect = e-152
Identities = 273/274 (99%)
Strand = Plus / Plus
Query: 1 atggcttcaacagcgaggaagatcaccctgaagagttccgatggtgcggccttcgaagtg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 34 atggcttcaacagcgaggaagatcaccctgaagggttccgatggtgcggccttcgaagtg 93
Query: 61 gaagaagcggtggtggcgcttcactcacagaccattaaggacatgatcaacgcccacagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 gaagaagcggtggtggcgcttcactcacagaccattaaggacatgatcaacgcccacagc 153
Query: 121 ggcatcgtcgctctttccgatgtaaccggcaacatcctcgccaaagtgatccagtattgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ggcatcgtcgctctttccgatgtaaccggcaacatcctcgccaaagtgatccagtattgc 213
Query: 181 aacaagcacagttccggtagcgagaatgagctccggcaatgggatgctgatttcgtgaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aacaagcacagttccggtagcgagaatgagctccggcaatgggatgctgatttcgtgaag 273
Query: 241 gttgatcgggacacgctcttcgatctcctcaatg 274
||||||||||||||||||||||||||||||||||
Sbjct: 274 gttgatcgggacacgctcttcgatctcctcaatg 307
Score = 246 bits (124), Expect = 9e-65
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 282 caatttgaagatcaagagccttttgaaccttattgttcataccgtagcacagatgatgaa 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 caatttgaagatcaagagccttttgaaccttattgttcataccgtagcacagatgatgaa 464
Query: 342 gggtatgaatcctcaggaaatttgcgagttaacaatgagaatgagtggttttagactcag 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gggtatgaatcctcaggaaatttgcgagttaacaatgagaatgagtggttttagactcag 524
Query: 402 ttga 405
||||
Sbjct: 525 ttga 528
>gnl|LJGI|BW597923 similar to UniRef100_Q155U3 Cluster: SKP1-like a; n=1; Medicago
truncatula|Rep: SKP1-like a - Medicago truncatula
(Barrel medic), partial (66%)
Length = 478
Score = 83.8 bits (42), Expect = 8e-16
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 220 tgggatgctgatttcgtgaaggttgatcgggacacgctcttcgatctcctcaatgctgca 279
||||||||||||||||| |||||||||| || |||||| ||||||||| || |||||
Sbjct: 341 tgggatgctgatttcgtcaaggttgatcaggccacgctgttcgatctcatcctggctgcg 400
Query: 280 aacaatttgaagatcaagagccttttgaacctta 313
||| ||||||| ||||||||||| ||| ||||||
Sbjct: 401 aactatttgaacatcaagagcctgttggacctta 434
>gnl|LJGI|TC73061 homologue to UniRef100_Q155U3 Cluster: SKP1-like a; n=1; Medicago
truncatula|Rep: SKP1-like a - Medicago truncatula
(Barrel medic), complete
Length = 831
Score = 83.8 bits (42), Expect = 8e-16
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 220 tgggatgctgatttcgtgaaggttgatcgggacacgctcttcgatctcctcaatgctgca 279
||||||||||||||||| |||||||||| || |||||| ||||||||| || |||||
Sbjct: 368 tgggatgctgatttcgtcaaggttgatcaggccacgctgttcgatctcatcctggctgcg 427
Query: 280 aacaatttgaagatcaagagccttttgaacctta 313
||| ||||||| ||||||||||| ||| ||||||
Sbjct: 428 aactatttgaacatcaagagcctgttggacctta 461
>gnl|LJGI|TC58761 homologue to UniRef100_Q155U3 Cluster: SKP1-like a; n=1; Medicago
truncatula|Rep: SKP1-like a - Medicago truncatula
(Barrel medic), partial (97%)
Length = 775
Score = 60.0 bits (30), Expect = 1e-08
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 216 gcaatgggatgctgatttcgtgaaggttgatcgggacacgctcttcgatctcctcaatgc 275
||||||||| ||||| ||||| |||||||||| || || |||||||||||| || ||
Sbjct: 314 gcaatgggacgctgaattcgtcaaggttgatcaggctaccctcttcgatctcatcctggc 373
Query: 276 tgcaaacaatttgaagatcaagagccttttgaacctta 313
||||||| | ||||| |||||||| || ||| ||||||
Sbjct: 374 tgcaaactacttgaacatcaagagtctcttggacctta 411