Miyakogusa Predicted Gene
- Lj5g3v0104720.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0104720.1 Non Chatacterized Hit- tr|I1M8C6|I1M8C6_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,81.82,0,Flavoproteins,NULL; Radical SAM enzymes,NULL;
Radical_SAM,Radical SAM; Wyosine_form,tRNA wybutosine-,CUFF.52521.1
(2181 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC78285 similar to UniRef100_A7NTC8 Cluster: Chromosome... 932 0.0
gnl|LJGI|TC59446 weakly similar to UniRef100_Q8RXN5 Cluster: tRN... 803 0.0
gnl|LJGI|DC597961 similar to UniRef100_A7NTC8 Cluster: Chromosom... 613 e-174
gnl|LJGI|BP041821 similar to UniRef100_Q8RXN5 Cluster: tRNA wybu... 585 e-166
gnl|LJGI|TC82581 weakly similar to UniRef100_A7NTC8 Cluster: Chr... 289 4e-77
gnl|LJGI|TC72092 weakly similar to UniRef100_Q8RXN5 Cluster: tRN... 276 6e-73
gnl|LJGI|TC67708 homologue to UniRef100_Q8RXN5 Cluster: tRNA wyb... 210 3e-53
gnl|LJGI|TC62715 weakly similar to UniRef100_A9T8M7 Cluster: Pre... 210 3e-53
>gnl|LJGI|TC78285 similar to UniRef100_A7NTC8 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (23%)
Length = 997
Score = 932 bits (470), Expect = 0.0
Identities = 470/470 (100%)
Strand = Plus / Plus
Query: 1712 accgcctgaccctggtgaaaggttggaacactgaagaggttgatgcttattccaagttct 1771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accgcctgaccctggtgaaaggttggaacactgaagaggttgatgcttattccaagttct 60
Query: 1772 ttagtatgggagaacctgactttattgaaatcaagggagttacatattgtggctcgaccg 1831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttagtatgggagaacctgactttattgaaatcaagggagttacatattgtggctcgaccg 120
Query: 1832 ctacatcaaaattgacaatggaaaatgtcccttggcatgctgatgtgaaagctttctcag 1891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctacatcaaaattgacaatggaaaatgtcccttggcatgctgatgtgaaagctttctcag 180
Query: 1892 aggccctggctctgaaaagccaaggggagtatgaagttgcttgtgagcatgttcactcat 1951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aggccctggctctgaaaagccaaggggagtatgaagttgcttgtgagcatgttcactcat 240
Query: 1952 gttgtgtcctcttggcaaaaactaagaagttcaaaattgatggccagtggtatacatgga 2011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gttgtgtcctcttggcaaaaactaagaagttcaaaattgatggccagtggtatacatgga 300
Query: 2012 tagactatgagaaatttcatgatctggtggcttctggagaaacttttgatagtaaagatt 2071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tagactatgagaaatttcatgatctggtggcttctggagaaacttttgatagtaaagatt 360
Query: 2072 acatggctgtcacaccatcctgggccgtttatggatcagaggaaggtggatttgatcctg 2131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acatggctgtcacaccatcctgggccgtttatggatcagaggaaggtggatttgatcctg 420
Query: 2132 gacaattaagatataggaaagagagacatcataagtcaaagccgcaataa 2181
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gacaattaagatataggaaagagagacatcataagtcaaagccgcaataa 470
>gnl|LJGI|TC59446 weakly similar to UniRef100_Q8RXN5 Cluster: tRNA
wybutosine-synthesizing protein 1 homolog; n=2;
Arabidopsis thaliana|Rep: tRNA wybutosine-synthesizing
protein 1 homolog - Arabidopsis thaliana (Mouse-ear
cress), partial (23%)
Length = 780
Score = 803 bits (405), Expect = 0.0
Identities = 405/405 (100%)
Strand = Plus / Plus
Query: 428 aaaccggaacctccaaaaccctcgcgcaacgcctccacagcttcctcgcttccaacggcg 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaaccggaacctccaaaaccctcgcgcaacgcctccacagcttcctcgcttccaacggcg 333
Query: 488 tcgttttcgaactcctcgatgcgcggagctacgagcccgaagacctccccaaggaaacgc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tcgttttcgaactcctcgatgcgcggagctacgagcccgaagacctccccaaggaaacgc 393
Query: 548 tcctcctcctcgtcgcttccacgtgggaagacgggaaacctccgccggagtctcgcttct 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tcctcctcctcgtcgcttccacgtgggaagacgggaaacctccgccggagtctcgcttct 453
Query: 608 tcgccaattggctcgctgagagcgccgaggattttagggttggttcgttgctgctgtcgc 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tcgccaattggctcgctgagagcgccgaggattttagggttggttcgttgctgctgtcgc 513
Query: 668 ggttgaggttcgcagttttcggtgttggaagcggagcttatggtgactcgttcaatgccg 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggttgaggttcgcagttttcggtgttggaagcggagcttatggtgactcgttcaatgccg 573
Query: 728 tcgcgagggatcttgtgaagaggatgagggagctgggtgcggcggaggtggttcctctcg 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tcgcgagggatcttgtgaagaggatgagggagctgggtgcggcggaggtggttcctctcg 633
Query: 788 gtgaaggggatgttgatgagggagacgtggatggggttttcgacc 832
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gtgaaggggatgttgatgagggagacgtggatggggttttcgacc 678
Score = 272 bits (137), Expect = 9e-72
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 226 gttcctcaactcaatcacgcacccttaactcgaaccatgtccatttcgttatcttcactc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 gttcctcaactcaatcacgcacccttaactcgaaccatgtccatttcgttatcttcactc 131
Query: 286 cccgctcgtctcacactcgtcgctctcttctccgccaccaccttctactgcctctacaaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 cccgctcgtctcacactcgtcgctctcttctccgccaccaccttctactgcctctacaaa 191
Query: 346 tctcgccgcttacgcca 362
|||||||||||||||||
Sbjct: 192 tctcgccgcttacgcca 208
Score = 60.0 bits (30), Expect = 6e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 151 ccgcgaaccgcactcgaaagagttcaacgg 180
||||||||||||||||||||||||||||||
Sbjct: 3 ccgcgaaccgcactcgaaagagttcaacgg 32
>gnl|LJGI|DC597961 similar to UniRef100_A7NTC8 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (11%)
Length = 577
Score = 613 bits (309), Expect = e-174
Identities = 309/309 (100%)
Strand = Plus / Plus
Query: 428 aaaccggaacctccaaaaccctcgcgcaacgcctccacagcttcctcgcttccaacggcg 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaaccggaacctccaaaaccctcgcgcaacgcctccacagcttcctcgcttccaacggcg 328
Query: 488 tcgttttcgaactcctcgatgcgcggagctacgagcccgaagacctccccaaggaaacgc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tcgttttcgaactcctcgatgcgcggagctacgagcccgaagacctccccaaggaaacgc 388
Query: 548 tcctcctcctcgtcgcttccacgtgggaagacgggaaacctccgccggagtctcgcttct 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tcctcctcctcgtcgcttccacgtgggaagacgggaaacctccgccggagtctcgcttct 448
Query: 608 tcgccaattggctcgctgagagcgccgaggattttagggttggttcgttgctgctgtcgc 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tcgccaattggctcgctgagagcgccgaggattttagggttggttcgttgctgctgtcgc 508
Query: 668 ggttgaggttcgcagttttcggtgttggaagcggagcttatggtgactcgttcaatgccg 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggttgaggttcgcagttttcggtgttggaagcggagcttatggtgactcgttcaatgccg 568
Query: 728 tcgcgaggg 736
|||||||||
Sbjct: 569 tcgcgaggg 577
Score = 272 bits (137), Expect = 9e-72
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 226 gttcctcaactcaatcacgcacccttaactcgaaccatgtccatttcgttatcttcactc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gttcctcaactcaatcacgcacccttaactcgaaccatgtccatttcgttatcttcactc 126
Query: 286 cccgctcgtctcacactcgtcgctctcttctccgccaccaccttctactgcctctacaaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 cccgctcgtctcacactcgtcgctctcttctccgccaccaccttctactgcctctacaaa 186
Query: 346 tctcgccgcttacgcca 362
|||||||||||||||||
Sbjct: 187 tctcgccgcttacgcca 203
>gnl|LJGI|BP041821 similar to UniRef100_Q8RXN5 Cluster: tRNA wybutosine-synthesizing
protein 1 homolog; n=2; Arabidopsis thaliana|Rep: tRNA
wybutosine-synthesizing protein 1 homolog - Arabidopsis
thaliana (Mouse-ear cress), partial (12%)
Length = 408
Score = 585 bits (295), Expect = e-166
Identities = 295/295 (100%)
Strand = Plus / Minus
Query: 922 agtagctctgaagaagaggaggattctgaggaggaaccggatattgttgatcttgaggac 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 agtagctctgaagaagaggaggattctgaggaggaaccggatattgttgatcttgaggac 349
Query: 982 attgccggtaaagctccttcgaggaagtccggggcgaaagtggaggaaaccaatggaaaa 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 attgccggtaaagctccttcgaggaagtccggggcgaaagtggaggaaaccaatggaaaa 289
Query: 1042 ttgaatggaaagaaggaaatggtgactccagtgattagagcaaatttagtgaagcagggg 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttgaatggaaagaaggaaatggtgactccagtgattagagcaaatttagtgaagcagggg 229
Query: 1102 tataaaattattggttcacatagcggtgtcaagatttgtagatggaccaagtctcagctt 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tataaaattattggttcacatagcggtgtcaagatttgtagatggaccaagtctcagctt 169
Query: 1162 cgaggacgaggtggttgctacaagcactcattttatggaatcgagagccataggt 1216
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 cgaggacgaggtggttgctacaagcactcattttatggaatcgagagccataggt 114
>gnl|LJGI|TC82581 weakly similar to UniRef100_A7NTC8 Cluster: Chromosome chr18
scaffold_1, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_1, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (25%)
Length = 1378
Score = 289 bits (146), Expect = 4e-77
Identities = 224/250 (89%)
Strand = Plus / Plus
Query: 428 aaaccggaacctccaaaaccctcgcgcaacgcctccacagcttcctcgcttccaacggcg 487
|||| |||||||||||| |||||||||| |||||||||||||||||| ||||||| ||||
Sbjct: 33 aaactggaacctccaaatccctcgcgcagcgcctccacagcttcctcacttccaaaggcg 92
Query: 488 tcgttttcgaactcctcgatgcgcggagctacgagcccgaagacctccccaaggaaacgc 547
|||||||||| ||||||||||||||| |||||||| ||| || ||| ||||||||||||
Sbjct: 93 tcgttttcgacctcctcgatgcgcggcactacgagcacgaggatctcaccaaggaaacgc 152
Query: 548 tcctcctcctcgtcgcttccacgtgggaagacgggaaacctccgccggagtctcgcttct 607
|||||||||| ||||||||||| || ||||||||||| ||||||| || ||||||||||
Sbjct: 153 tcctcctccttgtcgcttccacctgagaagacgggaatcctccgctcgaatctcgcttct 212
Query: 608 tcgccaattggctcgctgagagcgccgaggattttagggttggttcgttgctgctgtcgc 667
||||| ||||| || ||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 213 tcgcctcgtggctggccgagagcgcctaggattttagggttggttcgttgctgctatcgc 272
Query: 668 ggttgaggtt 677
||||||||||
Sbjct: 273 ggttgaggtt 282
Score = 210 bits (106), Expect = 3e-53
Identities = 115/118 (97%)
Strand = Plus / Plus
Query: 1097 aggggtataaaattattggttcacatagcggtgtcaagatttgtagatggaccaagtctc 1156
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 454 aggggtataaaattattggttcatatagcggtgtcaagatttgtagatggaccaagtctc 513
Query: 1157 agcttcgaggacgaggtggttgctacaagcactcattttatggaatcgagagccatag 1214
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 514 agcttcgaggacgaggtggttgctacaagcactcatttaatggaatcgagagtcatag 571
Score = 117 bits (59), Expect = 3e-25
Identities = 80/87 (91%)
Strand = Plus / Plus
Query: 745 aagaggatgagggagctgggtgcggcggaggtggttcctctcggtgaaggggatgttgat 804
|||||||| |||||||||| |||||||||||||||||||| | ||||||||||||||||
Sbjct: 296 aagaggatttgggagctgggcgcggcggaggtggttcctcttgttgaaggggatgttgat 355
Query: 805 gagggagacgtggatggggttttcgac 831
||||| |||||||||| ||||||||||
Sbjct: 356 gagggtgacgtggatgcggttttcgac 382
>gnl|LJGI|TC72092 weakly similar to UniRef100_Q8RXN5 Cluster: tRNA
wybutosine-synthesizing protein 1 homolog; n=2;
Arabidopsis thaliana|Rep: tRNA wybutosine-synthesizing
protein 1 homolog - Arabidopsis thaliana (Mouse-ear
cress), partial (20%)
Length = 543
Score = 276 bits (139), Expect = 6e-73
Identities = 217/243 (89%)
Strand = Plus / Plus
Query: 435 aacctccaaaaccctcgcgcaacgcctccacagcttcctcgcttccaacggcgtcgtttt 494
|||||||||| |||||||||| | ||| ||||| |||||||||||||| |||||||||||
Sbjct: 61 aacctccaaatccctcgcgcagcaccttcacagtttcctcgcttccaaaggcgtcgtttt 120
Query: 495 cgaactcctcgatgcgcggagctacgagcccgaagacctccccaaggaaacgctcctcct 554
||| |||||||||||||| |||||||| || || ||| |||||||||||||||||||
Sbjct: 121 cgacctcctcgatgcgcgacactacgagcatgaggatctcaccaaggaaacgctcctcct 180
Query: 555 cctcgtcgcttccacgtgggaagacgggaaacctccgccggagtctcgcttcttcgccaa 614
||||||||||||||| |||||||||||||| ||||||| || |||||||||||||||
Sbjct: 181 cctcgtcgcttccacctgggaagacgggaagcctccgctcgaatctcgcttcttcgcctc 240
Query: 615 ttggctcgctgagagcgccgaggattttagggttggttcgttgctgctgtcgcggttgag 674
||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 gtggctggccgagagcgccgaggattttagggttggttcgttgctgctatcgcggttgag 300
Query: 675 gtt 677
|||
Sbjct: 301 gtt 303
Score = 151 bits (76), Expect = 2e-35
Identities = 82/84 (97%)
Strand = Plus / Plus
Query: 1097 aggggtataaaattattggttcacatagcggtgtcaagatttgtagatggaccaagtctc 1156
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 460 aggggtataaaattattggttcatatagcggtgtcaagatttgtagatggaccaagtctc 519
Query: 1157 agcttcgaggacgaggtggttgct 1180
||| ||||||||||||||||||||
Sbjct: 520 agcatcgaggacgaggtggttgct 543
>gnl|LJGI|TC67708 homologue to UniRef100_Q8RXN5 Cluster: tRNA wybutosine-synthesizing
protein 1 homolog; n=2; Arabidopsis thaliana|Rep: tRNA
wybutosine-synthesizing protein 1 homolog - Arabidopsis
thaliana (Mouse-ear cress), partial (8%)
Length = 991
Score = 210 bits (106), Expect = 3e-53
Identities = 115/118 (97%)
Strand = Plus / Plus
Query: 1097 aggggtataaaattattggttcacatagcggtgtcaagatttgtagatggaccaagtctc 1156
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 153 aggggtataaaattattggttcatatagcggtgtcaagatttgtagatggaccaagtctc 212
Query: 1157 agcttcgaggacgaggtggttgctacaagcactcattttatggaatcgagagccatag 1214
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 213 agcttcgaggacgaggtggttgctacaagcactcatttaatggaatcgagagtcatag 270
Score = 123 bits (62), Expect = 5e-27
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 428 aaaccggaacctccaaaaccctcgcgcaacgcctccacagcttcctcgcttccaacggcg 487
|||| |||||||||||| |||||||||| |||||||||||||||||| ||||||| ||||
Sbjct: 9 aaactggaacctccaaatccctcgcgcagcgcctccacagcttcctcacttccaaaggcg 68
Query: 488 tcgttttcgaactcctcgatgcgcgg 513
|||||||||| |||||||||||||||
Sbjct: 69 tcgttttcgacctcctcgatgcgcgg 94
>gnl|LJGI|TC62715 weakly similar to UniRef100_A9T8M7 Cluster: Predicted protein; n=1;
Physcomitrella patens subsp. patens|Rep: Predicted
protein - Physcomitrella patens subsp. patens, partial
(3%)
Length = 762
Score = 210 bits (106), Expect = 3e-53
Identities = 242/291 (83%), Gaps = 21/291 (7%)
Strand = Plus / Plus
Query: 542 aaacgctcctcctcctcgtcgcttccacgtgggaagacgggaaacctccgccggagtctc 601
|||| |||||||||||||| |||||||| |||||||||||||| |||||||| || ||||
Sbjct: 363 aaacactcctcctcctcgtggcttccacctgggaagacgggaagcctccgcccgaatctc 422
Query: 602 gcttcttcgccaattggctcgctgagagcgccgaggattttagggttggttcgttgctgc 661
||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct: 423 gcttcttcgcctcgtggctcgcc-------ccgagcattttagggttggttcgttgctgc 475
Query: 662 tgtcgcggttgaggttcgcagttttcggtgttggaagcggagcttatggtgactcgttca 721
| ||||||||||||| ||||||||| ||| |||||||||||| || |
Sbjct: 476 tatcgcggttgaggt--------------gttggaagcagaggttatggtgactccttta 521
Query: 722 atgccgtcgcgagggatcttgtgaagaggatgagggagctgggtgcggcggaggtggttc 781
||| |||||||||||| || ||||||||||||| ||||||| || |||||||||||||
Sbjct: 522 atgtcgtcgcgagggacctcacgaagaggatgaggtagctgggcgcagcggaggtggttc 581
Query: 782 ctctcggtgaaggggatgttgatgagggagacgtggatggggttttcgacc 832
|||| | ||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 582 ctcttgttgaaggggatgttgatgagggtgacgtggatgcggttttcgacc 632
Score = 63.9 bits (32), Expect = 4e-09
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1097 aggggtataaaattattggttcacatagcggtgtca 1132
||||||||||||||||||||||| ||||||||||||
Sbjct: 727 aggggtataaaattattggttcatatagcggtgtca 762