Miyakogusa Predicted Gene
- Lj5g3v0081960.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0081960.2 Non Chatacterized Hit- tr|B9R7N6|B9R7N6_RICCO
Multidrug resistance pump, putative OS=Ricinus communi,77.75,0,MATE
EFFLUX FAMILY PROTEIN,NULL; MULTIDRUG RESISTANCE PROTEIN,NULL;
MatE,Multi antimicrobial extrusi,CUFF.52480.2
(1449 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AV776569 similar to UniRef100_A7NTK1 Cluster: Chromosom... 1144 0.0
gnl|LJGI|DC597575 similar to UniRef100_A7NTK1 Cluster: Chromosom... 389 e-107
gnl|LJGI|TC72883 similar to UniRef100_A7PXG2 Cluster: Chromosome... 62 1e-08
gnl|LJGI|TC64715 similar to UniRef100_A7PXG2 Cluster: Chromosome... 62 1e-08
gnl|LJGI|TC79646 similar to UniRef100_A7QG49 Cluster: Chromosome... 56 6e-07
gnl|LJGI|TC77314 similar to UniRef100_Q4ABV9 Cluster: 4D11_28; n... 52 1e-05
>gnl|LJGI|AV776569 similar to UniRef100_A7NTK1 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (42%)
Length = 606
Score = 1144 bits (577), Expect = 0.0
Identities = 597/606 (98%)
Strand = Plus / Plus
Query: 57 gaagccactgagcttggttcggagattcgggatcgagtccaagaagttgtggaagatagc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagccactgagcttggttcggagattcgggatcgagtccaagaagttgtggaagatagc 60
Query: 117 aggtcctgcaattttaacaatgttgtgtcagtactcgcttggtgcattcaccctcacatt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aggtcctgcaattttaacaatgttgtgtcagtactcgcttggtgcattcaccctcacatt 120
Query: 177 tgtaggccatgtgggagagctcgatcttgcagcagtttctgttgaaaactcttgcattgc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgtaggccatgtgggagagctcgatcttgcagcagtttctgttgaaaactcttgcattgc 180
Query: 237 tggcttctcctttggagtcatgttgggtatggggagtgccttggagactctctgtggaca 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tggcttctcctttggagtcatgttgggtatggggagtgccttggagactctctgtggaca 240
Query: 297 agcattcggtgcgggtcagagcaggatgttgggggtgtacatgcaaagatcatgggtcat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agcattcggtgcgggtcagagcaggatgttgggggtgtacatgcaaagatcatgggtcat 300
Query: 357 cttatttactactgccttgattttggtccctgcatatgtttggtcacctcccatcttgag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cttatttactactgccttgattttggtccctgcatatgtttggtcacctcccatcttgag 360
Query: 417 ggtcattggacaaactactgaaatctcagaagctgctggaaaatttgctttgtggatgtt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggtcattggacaaactactgaaatctcagaagctgctggaaaatttgctttgtggatgtt 420
Query: 477 accacagttgtttgcatatgctttcaactttccaatgcagaagttcttacagtcacagag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 accacagttgtttgcatatgctttcaactttccaatgcagaagttcttacagtcacagag 480
Query: 537 gaaagtccaagtgatgttatggatatcagcaactgtcgtggtgctacatannnnnnncag 596
||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 481 gaaagtccaagtgatgttatggatatcagcaactgtcctggtgctacatatatttttcag 540
Query: 597 ttggctcctaatactgaaacttgggtggggcttaactggagcagcaattgctcttaacgc 656
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 541 ttggctcctaatactgaaacttgggtggggcttaactggagcagcaattactcttaacgc 600
Query: 657 atcatg 662
||||||
Sbjct: 601 atcatg 606
>gnl|LJGI|DC597575 similar to UniRef100_A7NTK1 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (12%)
Length = 416
Score = 389 bits (196), Expect = e-107
Identities = 196/196 (100%)
Strand = Plus / Minus
Query: 1254 attaccagcagggatattgttgggattcacatttcattttggagcagagggtatttggtc 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 attaccagcagggatattgttgggattcacatttcattttggagcagagggtatttggtc 357
Query: 1314 agggatgattggtggtacagttctgcagaccataatccttataatcgttacttcagtaac 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 agggatgattggtggtacagttctgcagaccataatccttataatcgttacttcagtaac 297
Query: 1374 gaactggaagaaggaggctgaacaagcagagggtcgcatgaagagatggggaggatcaat 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gaactggaagaaggaggctgaacaagcagagggtcgcatgaagagatggggaggatcaat 237
Query: 1434 tgctaatgaacaatga 1449
||||||||||||||||
Sbjct: 236 tgctaatgaacaatga 221
>gnl|LJGI|TC72883 similar to UniRef100_A7PXG2 Cluster: Chromosome chr12 scaffold_36,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_36, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (42%)
Length = 763
Score = 61.9 bits (31), Expect = 1e-08
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 254 tcatgttgggtatggggagtgccttggagactctctgtggacaagcattcggtgc 308
|||||||||||||||| ||||| ||||||| || |||||||||||||| |||||
Sbjct: 358 tcatgttgggtatgggaagtgctgtggagacgctatgtggacaagcatttggtgc 412
>gnl|LJGI|TC64715 similar to UniRef100_A7PXG2 Cluster: Chromosome chr12 scaffold_36,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_36, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (45%)
Length = 821
Score = 61.9 bits (31), Expect = 1e-08
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 254 tcatgttgggtatggggagtgccttggagactctctgtggacaagcattcggtgc 308
|||||||||||||||| ||||| ||||||| || |||||||||||||| |||||
Sbjct: 376 tcatgttgggtatgggaagtgctgtggagacgctatgtggacaagcatttggtgc 430
>gnl|LJGI|TC79646 similar to UniRef100_A7QG49 Cluster: Chromosome undetermined
scaffold_91, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_91, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(38%)
Length = 897
Score = 56.0 bits (28), Expect = 6e-07
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 1154 ttcttaacagccttcaaccagtcttatctggtgttgctgttggagctgggtggcaagctc 1213
|||||||||| |||||||||| | || |||||||||||||||| ||||||||| || |
Sbjct: 303 ttcttaacagtgttcaaccagtgatttcaggtgttgctgttggaggtgggtggcaggccc 362
Query: 1214 ttgtagcatacatcaa 1229
| || || ||||||||
Sbjct: 363 tggtggcttacatcaa 378
>gnl|LJGI|TC77314 similar to UniRef100_Q4ABV9 Cluster: 4D11_28; n=1; Brassica rapa
subsp. pekinensis|Rep: 4D11_28 - Brassica rapa subsp.
pekinensis (Chinese cabbage), partial (37%)
Length = 731
Score = 52.0 bits (26), Expect = 1e-05
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 1199 ctgggtggcaagctcttgtagcatacatcaacattgggtgctacta 1244
|||| |||||||| ||||||||||||| ||||| |||||||||||
Sbjct: 242 ctggatggcaagcatttgtagcatacataaacatagggtgctacta 287