Miyakogusa Predicted Gene
- Lj5g3v0080940.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0080940.1 Non Chatacterized Hit- tr|F1SSQ2|F1SSQ2_PIG
Uncharacterized protein (Fragment) OS=Sus scrofa
GN=BARD,27.85,2.7,seg,NULL,NODE_93996_length_906_cov_18.109272.path2.1
(330 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO036823 466 e-131
gnl|LJGI|TC72629 103 7e-22
gnl|LJGI|TC68850 UniRef100_Q96AQ8-2 Cluster: Isoform 2 of Q96AQ8... 88 4e-17
>gnl|LJGI|GO036823
Length = 539
Score = 466 bits (235), Expect = e-131
Identities = 235/235 (100%)
Strand = Plus / Plus
Query: 1 atggatgctgctacttttgggaactatggtacgggtattcctagtgaggggctcaagttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 atggatgctgctacttttgggaactatggtacgggtattcctagtgaggggctcaagttg 364
Query: 61 ggtgatggtgtaccatgtccttggtcagattatgataagaaaaattattatgtttccttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggtgatggtgtaccatgtccttggtcagattatgataagaaaaattattatgtttccttg 424
Query: 121 tgttgtgcgtctaagttacaagggttgcttaagaaaaggaaacattgtgagatttctaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgttgtgcgtctaagttacaagggttgcttaagaaaaggaaacattgtgagatttctaag 484
Query: 181 acaaaggacacaatgactgttggtgttttaaatcctaatgatcgtatgcttcact 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 acaaaggacacaatgactgttggtgttttaaatcctaatgatcgtatgcttcact 539
>gnl|LJGI|TC72629
Length = 688
Score = 103 bits (52), Expect = 7e-22
Identities = 117/138 (84%), Gaps = 3/138 (2%)
Strand = Plus / Plus
Query: 1 atggatgctgctacttttgggaactatggtacgggtattcctagtgaggggctcaagttg 60
||||||| ||||||||||||||||| || | |||||||||||| ||| ||| |||||
Sbjct: 537 atggatgttgctacttttgggaactgtgctc---gtattcctagtgtgggactcgagttg 593
Query: 61 ggtgatggtgtaccatgtccttggtcagattatgataagaaaaattattatgtttccttg 120
||||||||| |||||||||||||||| |||| |||||||||| ||||||| || |||
Sbjct: 594 ggtgatggtttaccatgtccttggtctgattttgataagaaagcttattatacctctttg 653
Query: 121 tgttgtgcgtctaagtta 138
||| ||| ||||||||||
Sbjct: 654 tgtcgtgagtctaagtta 671
>gnl|LJGI|TC68850 UniRef100_Q96AQ8-2 Cluster: Isoform 2 of Q96AQ8 ; n=1; Homo
sapiens|Rep: Isoform 2 of Q96AQ8 - Homo sapiens
(Human), partial (5%)
Length = 903
Score = 87.7 bits (44), Expect = 4e-17
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 145 ttgcttaagaaaaggaaacattgtgagatttctaagacaaaggacacaatgactgttggt 204
||||||||||||||| ||| |||||||| | ||||||||||||||||||| |||||||
Sbjct: 24 ttgcttaagaaaagggaactttgtgagactcataagacaaaggacacaatgcttgttggt 83
Query: 205 gttttaaatcctaatgatcgtatgcttcactatttt 240
|||| |||| | ||||||| ||||||||||||||
Sbjct: 84 attttgaatcgtgatgatcgcgtgcttcactatttt 119