Miyakogusa Predicted Gene
- Lj5g3v0069830.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0069830.1 tr|G7LCF5|G7LCF5_MEDTR Poly(A) polymerase
OS=Medicago truncatula GN=MTR_8g106560 PE=4
SV=1,68.97,0,PAP_central,Poly(A) polymerase, central domain;
PAP_RNA-bind,Poly(A) polymerase, RNA-binding domain;,CUFF.52472.1
(1497 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS322881 similar to UniRef100_A7PGZ4 Cluster: Chromosom... 973 0.0
gnl|LJGI|TC65186 912 0.0
gnl|LJGI|GO020094 similar to UniRef100_A7P3F5 Cluster: Chromosom... 143 4e-33
gnl|LJGI|TC65946 similar to UniRef100_A7PGZ3 Cluster: Chromosome... 76 7e-13
>gnl|LJGI|FS322881 similar to UniRef100_A7PGZ4 Cluster: Chromosome chr17 scaffold_16,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_16, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (19%)
Length = 688
Score = 973 bits (491), Expect = 0.0
Identities = 491/491 (100%)
Strand = Plus / Plus
Query: 413 agattgagaagcacacttacggcatgcttcaaagtcatccacatcctggtgaattttctg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 agattgagaagcacacttacggcatgcttcaaagtcatccacatcctggtgaattttctg 257
Query: 473 ataaatctagacctttacactgctcttacttcatgggtctgcaacgtaagcagggagttc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ataaatctagacctttacactgctcttacttcatgggtctgcaacgtaagcagggagttc 317
Query: 533 cagtcaatgatggtgaacaatttgatataagattaactgttgaagaatttaagcaaacag 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cagtcaatgatggtgaacaatttgatataagattaactgttgaagaatttaagcaaacag 377
Query: 593 tcaacatgtacatgctatggaaacctggaatggatatccacatctcccatgtaaaacgcc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tcaacatgtacatgctatggaaacctggaatggatatccacatctcccatgtaaaacgcc 437
Query: 653 gtaatatacctaactttgtatttcctggaggtgttcgaccttcccgcccagctaaaataa 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gtaatatacctaactttgtatttcctggaggtgttcgaccttcccgcccagctaaaataa 497
Query: 713 cctgggagagtaagcgaaattcagaattaatgatatctggcaatggtcaagcagaaaagt 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cctgggagagtaagcgaaattcagaattaatgatatctggcaatggtcaagcagaaaagt 557
Query: 773 ctgaagaagataaagtggttgtcttaggagaaaatgatgataggaagagaaagcaagcag 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctgaagaagataaagtggttgtcttaggagaaaatgatgataggaagagaaagcaagcag 617
Query: 833 aggatagcctggatgacttgagaaattccaagtcctttgcatctttgcctccctccagca 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aggatagcctggatgacttgagaaattccaagtcctttgcatctttgcctccctccagca 677
Query: 893 gggaagttgat 903
|||||||||||
Sbjct: 678 gggaagttgat 688
>gnl|LJGI|TC65186
Length = 728
Score = 912 bits (460), Expect = 0.0
Identities = 466/468 (99%)
Strand = Plus / Plus
Query: 1030 agggatagagagaccaccggatcagtgagaaacaactcaaatgtcaatcctatgcctata 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agggatagagagaccaccggatcagtgagaaacaactcaaatgtcaatcctatgcctata 60
Query: 1090 atttttgctaccgatacatctagttctaaagaagcagaaaagctggccatcgaaaagatt 1149
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 61 atttttgctaccgatacatctagttttaaagaagcagaaaagctggccatcgaaaagatt 120
Query: 1150 atgcctggtccatatgatgcgcatcaagcctttccaaaagaacctgatgagcttgaaaat 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgcctggtccatatgatgcgcatcaagcctttccaaaagaacctgatgagcttgaaaat 180
Query: 1210 gatattgaggataaaaatcgagtcaaggattttggtatgaacacgcaaaccagaaacttg 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gatattgaggataaaaatcgagtcaaggattttggtatgaacacgcaaaccagaaacttg 240
Query: 1270 gactcttcaaactcaagctcatgtgtggcagaagaaccagttgtttctaaaacggaaacc 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gactcttcaaactcaagctcatgtgtggcagaagaaccagttgtttctaaaacggaaacc 300
Query: 1330 acttgttcaactaatctatactctaggggggtcttggaggagcttgagcctgctgagctg 1389
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 301 acttgttcaactaatctatactctagtggggtcttggaggagcttgagcctgctgagctg 360
Query: 1390 accgcgccattgttaagtgggactcctgcaccagtgccagagcggaagccccttatcaga 1449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 accgcgccattgttaagtgggactcctgcaccagtgccagagcggaagccccttatcaga 420
Query: 1450 ttcaatttcacatccttggggaaagctgctgacaaaagttgttagaca 1497
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttcaatttcacatccttggggaaagctgctgacaaaagttgttagaca 468
>gnl|LJGI|GO020094 similar to UniRef100_A7P3F5 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (58%)
Length = 708
Score = 143 bits (72), Expect = 4e-33
Identities = 102/112 (91%)
Strand = Plus / Plus
Query: 1 atgttagtgtctcggttctttagggtatatactcagtggcgttggccaaacccagtaatg 60
|||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct: 590 atgttagtgtctcgattctttagggtatatactcaatggcgatggccaaacccagtcatg 649
Query: 61 ctttgtcctattgaagaaggatctcttggacttcaagtttgggatcctagaa 112
|||||| |||||||||| ||||||||||||| || |||||||||||||||
Sbjct: 650 ctttgtggtattgaagaaagatctcttggactacagatttgggatcctagaa 701
>gnl|LJGI|TC65946 similar to UniRef100_A7PGZ3 Cluster: Chromosome chr17 scaffold_16,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_16, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (25%)
Length = 842
Score = 75.8 bits (38), Expect = 7e-13
Identities = 97/116 (83%), Gaps = 3/116 (2%)
Strand = Plus / Plus
Query: 1294 gtggcagaagaaccagttgtttctaaaacggaaaccacttgttcaactaatctatactct 1353
||||||||||| |||||| ||||||| || |||||| |||||| || |||||| ||||
Sbjct: 438 gtggcagaagagccagttatttctaa---gggaaccacatgttcaccttatctatgctct 494
Query: 1354 aggggggtcttggaggagcttgagcctgctgagctgaccgcgccattgttaagtgg 1409
| |||| | |||||||||||||||| |||||| || | || ||||||||||||||
Sbjct: 495 aatgggggcctggaggagcttgagccagctgagttgtcagcaccattgttaagtgg 550
Score = 56.0 bits (28), Expect = 7e-07
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 1102 gatacatctagttctaaagaagcagaaaagctggccatcgaaaagattatgcctggtcca 1161
|||||||||| ||||||||||| ||||| |||||||| || ||||| ||| | |||||
Sbjct: 249 gatacatctaattctaaagaagaggaaaaactggccattgagaagatcatgtccggtccc 308
Query: 1162 tatgatgcgcatcaagcctt 1181
||||||| || ||| |||||
Sbjct: 309 tatgatgggcgtcaggcctt 328