Miyakogusa Predicted Gene
- Lj5g3v0035410.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0035410.2 tr|D7KAU1|D7KAU1_ARALL ATRBP47C OS=Arabidopsis
lyrata subsp. lyrata GN=ARALYDRAFT_473892 PE=4
SV=1,26.56,0.00000000009,RNA-binding domain, RBD,NULL; RRM_1,RNA
recognition motif domain; RRM,RNA recognition motif domain;
,CUFF.52448.2
(942 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC70242 similar to UniRef100_Q93YF1 Cluster: Nucleic ac... 785 0.0
gnl|LJGI|TC59209 similar to UniRef100_A7NTR1 Cluster: Chromosome... 726 0.0
gnl|LJGI|TC74415 similar to UniRef100_A7NTR1 Cluster: Chromosome... 311 4e-84
gnl|LJGI|BP056008 similar to UniRef100_Q93YF1 Cluster: Nucleic a... 244 8e-64
gnl|LJGI|TC77516 similar to UniRef100_Q0JCT9 Cluster: Os04g04499... 117 1e-25
gnl|LJGI|TC58230 weakly similar to UniRef100_UPI00001630C7 Clust... 72 7e-12
gnl|LJGI|TC63380 similar to UniRef100_A7P9G1 Cluster: Chromosome... 66 4e-10
gnl|LJGI|TC81751 weakly similar to UniRef100_UPI00001630C7 Clust... 56 4e-07
>gnl|LJGI|TC70242 similar to UniRef100_Q93YF1 Cluster: Nucleic acid binding protein;
n=1; Nicotiana tabacum|Rep: Nucleic acid binding protein
- Nicotiana tabacum (Common tobacco), partial (30%)
Length = 688
Score = 785 bits (396), Expect = 0.0
Identities = 396/396 (100%)
Strand = Plus / Plus
Query: 547 tcagattccacaaatacaactatatttgttggaggactcgaccctaatgttacagaagaa 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcagattccacaaatacaactatatttgttggaggactcgaccctaatgttacagaagaa 60
Query: 607 gatcttaggcagccattctcccagtacggtgagatagtctctgttaagatacctgtgggg 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatcttaggcagccattctcccagtacggtgagatagtctctgttaagatacctgtgggg 120
Query: 667 aaagggtgtggttttgtccagtttgcaaacagaaataatgctgaagaggcgttgcagaag 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaagggtgtggttttgtccagtttgcaaacagaaataatgctgaagaggcgttgcagaag 180
Query: 727 ctaaatgggacaacaattggaaagcaaacagttcgtctttcttggggccgcaatccagca 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctaaatgggacaacaattggaaagcaaacagttcgtctttcttggggccgcaatccagca 240
Query: 787 aataagcagattagaatggatttcggcagtccctggggaggggcatattatggggcacca 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aataagcagattagaatggatttcggcagtccctggggaggggcatattatggggcacca 300
Query: 847 gtttatgatggctatggatatgctttgccgccacctcatgatccaagaatatatgctgct 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtttatgatggctatggatatgctttgccgccacctcatgatccaagaatatatgctgct 360
Query: 907 gcttatggagcgtaccccatttacggaggccaccaa 942
||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcttatggagcgtaccccatttacggaggccaccaa 396
>gnl|LJGI|TC59209 similar to UniRef100_A7NTR1 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (41%)
Length = 761
Score = 726 bits (366), Expect = 0.0
Identities = 369/370 (99%)
Strand = Plus / Plus
Query: 1 atggacgaaaattatctccaccgctgtttcgcttccaccggcgagatttcctccatcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atggacgaaaattatctccaccgctgtttcgcttccaccggcgagatttcctccatcaaa 451
Query: 61 gttattcgcaataagcagactggtttatcagagggttatggatttgtggagttctattca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gttattcgcaataagcagactggtttatcagagggttatggatttgtggagttctattca 511
Query: 121 cacgccacagctgagaaagttttacagaattatgctggagtcttgatgcccaatacagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cacgccacagctgagaaagttttacagaattatgctggagtcttgatgcccaatacagac 571
Query: 181 caacctttccgtctgaactgggcaacatttagcactggggagaagacttcagataatgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 caacctttccgtctgaactgggcaacatttagcactggggagaagacttcagataatgtt 631
Query: 241 tctgatctttcaattttcgtaggagatttagctgcagatgttacggatagtttgttacat 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tctgatctttcaattttcataggagatttagctgcagatgttacggatagtttgttacat 691
Query: 301 gaaacatttgctagtgtatacccttcagtcaaagccgcaaaagttgtttttgatgccaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gaaacatttgctagtgtatacccttcagtcaaagccgcaaaagttgtttttgatgccaat 751
Query: 361 actggccgtt 370
||||||||||
Sbjct: 752 actggccgtt 761
>gnl|LJGI|TC74415 similar to UniRef100_A7NTR1 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (45%)
Length = 792
Score = 311 bits (157), Expect = 4e-84
Identities = 313/365 (85%)
Strand = Plus / Plus
Query: 1 atggacgaaaattatctccaccgctgtttcgcttccaccggcgagatttcctccatcaaa 60
||||| || |||||||||||||||||||| ||||||| |||||||||| ||| || ||
Sbjct: 424 atggatgagaattatctccaccgctgttttgcttccatcggcgagattaactctattaag 483
Query: 61 gttattcgcaataagcagactggtttatcagagggttatggatttgtggagttctattca 120
||||||||||||||| |||||| | ||||||||||||||||||||||| |||||||||
Sbjct: 484 gttattcgcaataagtctactggtctgtcagagggttatggatttgtggaattctattca 543
Query: 121 cacgccacagctgagaaagttttacagaattatgctggagtcttgatgcccaatacagac 180
|| ||||||||||||||| ||||| | ||||||||| | |||||||| || || ||
Sbjct: 544 catagcacagctgagaaagtcttacaaacttatgctgggatgttgatgcctaacacggag 603
Query: 181 caacctttccgtctgaactgggcaacatttagcactggggagaagacttcagataatgtt 240
||||||||||| ||||||||||||||||||||||| || || ||| |||||||||||||
Sbjct: 604 caacctttccgcctgaactgggcaacatttagcacaggagacaagcgttcagataatgtt 663
Query: 241 tctgatctttcaattttcgtaggagatttagctgcagatgttacggatagtttgttacat 300
||||||| || ||||| |||||||||||||||| ||||||||| |||| |||| |||
Sbjct: 664 cctgatctctctatttttgtaggagatttagctggagatgttacagataccatgttgcat 723
Query: 301 gaaacatttgctagtgtatacccttcagtcaaagccgcaaaagttgtttttgatgccaat 360
||||| ||||||| | ||||||||| || || || ||||||||||||||||||||||||
Sbjct: 724 gaaacttttgctaataaatacccttctgttaaggctgcaaaagttgtttttgatgccaat 783
Query: 361 actgg 365
|||||
Sbjct: 784 actgg 788
>gnl|LJGI|BP056008 similar to UniRef100_Q93YF1 Cluster: Nucleic acid binding protein;
n=1; Nicotiana tabacum|Rep: Nucleic acid binding protein
- Nicotiana tabacum (Common tobacco), partial (18%)
Length = 533
Score = 244 bits (123), Expect = 8e-64
Identities = 223/256 (87%), Gaps = 3/256 (1%)
Strand = Plus / Minus
Query: 688 tttgcaaacagaaataatgctgaagaggcgttgcagaagctaaatgggacaacaattgga 747
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 531 tttgcaaacagaaataatgctgaagaggcgttgcagaagctaaatggcacaacgattggc 472
Query: 748 aagcaaacagttcgtctttcttggggccgcaatccagcaaataagcagattagaatggat 807
||||||||||||||||||||||||| ||||||||| ||||||||| | ||||| ||||
Sbjct: 471 aagcaaacagttcgtctttcttgggcccgcaatccgccaaataagccgtttagaggggat 412
Query: 808 ttcggcagtccctggggaggggcatattatggggcaccagtttatgatggctatggatat 867
|||| |||||| ||| ||||| |||||||||| ||| ||||||||||| |||||||||
Sbjct: 411 ttcgncagtccttggaatggggcgtattatgggggacctgtttatgatggttatggatat 352
Query: 868 gctttgccgcca---cctcatgatccaagaatatatgctgctgcttatggagcgtacccc 924
||||| |||||| ||||||||||| || | || ||||||||||||||| || |||||
Sbjct: 351 gcttttccgccatcgcctcatgatcccagcacatttgctgctgcttatggggcttaccct 292
Query: 925 atttacggaggccacc 940
|||| ||||| ||||
Sbjct: 291 gtttatggagggcacc 276
>gnl|LJGI|TC77516 similar to UniRef100_Q0JCT9 Cluster: Os04g0449900 protein; n=1;
Oryza sativa Japonica Group|Rep: Os04g0449900 protein -
Oryza sativa subsp. japonica (Rice), partial (10%)
Length = 482
Score = 117 bits (59), Expect = 1e-25
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 1 atggacgaaaattatctccaccgctgtttcgcttccaccggcgagatttcctccatcaa 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atggacgaaaattatctccaccgctgtttcgcttccaccggcgagatttcctccatcaa 482
>gnl|LJGI|TC58230 weakly similar to UniRef100_UPI00001630C7 Cluster: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding; n=1; Arabidopsis thaliana|Rep: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding - Arabidopsis thaliana, partial (41%)
Length = 832
Score = 71.9 bits (36), Expect = 7e-12
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 64 attcgcaataagcagactggtttatcagagggttatggatttgtggagttctattcacac 123
||||| |||||||| |||||| || ||||| ||||||||||||||||||||||| |
Sbjct: 555 attcggaataagcaaactggtcagtcggagggatatggatttgtggagttctattcgcga 614
Query: 124 gccacagctgagaaagttttacagaatt 151
|| |||||||||||||| || |||||||
Sbjct: 615 gcaacagctgagaaagtcttgcagaatt 642
>gnl|LJGI|TC63380 similar to UniRef100_A7P9G1 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (32%)
Length = 769
Score = 65.9 bits (33), Expect = 4e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 742 attggaaagcaaacagttcgtctttcttggggccgcaatccagcaaataagca 794
||||| ||||| ||||| ||||||||||||||||||| ||||| |||||||||
Sbjct: 271 attgggaagcagacagtgcgtctttcttggggccgcagtccaggaaataagca 323
>gnl|LJGI|TC81751 weakly similar to UniRef100_UPI00001630C7 Cluster: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding; n=1; Arabidopsis thaliana|Rep: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding - Arabidopsis thaliana, partial (26%)
Length = 783
Score = 56.0 bits (28), Expect = 4e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 64 attcgcaataagcagactggtttatcagagggttatggatttgtggagttctattc 119
||||| |||||||| |||||| || ||||| |||||||||||||||||||||||
Sbjct: 609 attcggaataagcaaactggtcagtcggagggatatggatttgtggagttctattc 664