Miyakogusa Predicted Gene
- Lj5g3v0035410.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj5g3v0035410.1 Non Chatacterized Hit- tr|I3S4D1|I3S4D1_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,27.66,0.0000000000001,RNA-binding domain, RBD,NULL; RRM_1,RNA
recognition motif domain; RRM,RNA recognition motif domain;
,CUFF.52448.1
(921 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59209 similar to UniRef100_A7NTR1 Cluster: Chromosome... 1291 0.0
gnl|LJGI|TC77516 similar to UniRef100_Q0JCT9 Cluster: Os04g04499... 682 0.0
gnl|LJGI|TC74415 similar to UniRef100_A7NTR1 Cluster: Chromosome... 343 1e-93
gnl|LJGI|TC58230 weakly similar to UniRef100_UPI00001630C7 Clust... 72 7e-12
gnl|LJGI|TC81751 weakly similar to UniRef100_UPI00001630C7 Clust... 56 4e-07
>gnl|LJGI|TC59209 similar to UniRef100_A7NTR1 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (41%)
Length = 761
Score = 1291 bits (651), Expect = 0.0
Identities = 654/655 (99%)
Strand = Plus / Plus
Query: 1 atgcaacaatccaacggctctgattcgtcgacggaaccgaacaacaagcagcggtcagcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 atgcaacaatccaacggctctgattcgtcgacggaaccgaacaacaagcagcggtcagcg 166
Query: 61 gcggtggcggtgccgcagcagtgggtgccgatgcagtatccggctatggtaatgccgcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 gcggtggcggtgccgcagcagtgggtgccgatgcagtatccggctatggtaatgccgcac 226
Query: 121 cacatgttaccgccgccgcctcaacattaccccccgccgccgccgccttacgtgccttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 cacatgttaccgccgccgcctcaacattaccccccgccgccgccgccttacgtgccttac 286
Query: 181 catcaccaccaccaccagttcgcgccgccacatcagcagcatcaccatggatccaacaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 catcaccaccaccaccagttcgcgccgccacatcagcagcatcaccatggatccaacaat 346
Query: 241 aacatcgagaacaaaaccgtttgggttggagatttgcatcactggatggacgaaaattat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aacatcgagaacaaaaccgtttgggttggagatttgcatcactggatggacgaaaattat 406
Query: 301 ctccaccgctgtttcgcttccaccggcgagatttcctccatcaaagttattcgcaataag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctccaccgctgtttcgcttccaccggcgagatttcctccatcaaagttattcgcaataag 466
Query: 361 cagactggtttatcagagggttatggatttgtggagttctattcacacgccacagctgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cagactggtttatcagagggttatggatttgtggagttctattcacacgccacagctgag 526
Query: 421 aaagttttacagaattatgctggagtcttgatgcccaatacagaccaacctttccgtctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aaagttttacagaattatgctggagtcttgatgcccaatacagaccaacctttccgtctg 586
Query: 481 aactgggcaacatttagcactggggagaagacttcagataatgtttctgatctttcaatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aactgggcaacatttagcactggggagaagacttcagataatgtttctgatctttcaatt 646
Query: 541 ttcgtaggagatttagctgcagatgttacggatagtttgttacatgaaacatttgctagt 600
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ttcataggagatttagctgcagatgttacggatagtttgttacatgaaacatttgctagt 706
Query: 601 gtatacccttcagtcaaagccgcaaaagttgtttttgatgccaatactggccgtt 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gtatacccttcagtcaaagccgcaaaagttgtttttgatgccaatactggccgtt 761
>gnl|LJGI|TC77516 similar to UniRef100_Q0JCT9 Cluster: Os04g0449900 protein; n=1;
Oryza sativa Japonica Group|Rep: Os04g0449900 protein -
Oryza sativa subsp. japonica (Rice), partial (10%)
Length = 482
Score = 682 bits (344), Expect = 0.0
Identities = 344/344 (100%)
Strand = Plus / Plus
Query: 1 atgcaacaatccaacggctctgattcgtcgacggaaccgaacaacaagcagcggtcagcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 atgcaacaatccaacggctctgattcgtcgacggaaccgaacaacaagcagcggtcagcg 198
Query: 61 gcggtggcggtgccgcagcagtgggtgccgatgcagtatccggctatggtaatgccgcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gcggtggcggtgccgcagcagtgggtgccgatgcagtatccggctatggtaatgccgcac 258
Query: 121 cacatgttaccgccgccgcctcaacattaccccccgccgccgccgccttacgtgccttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cacatgttaccgccgccgcctcaacattaccccccgccgccgccgccttacgtgccttac 318
Query: 181 catcaccaccaccaccagttcgcgccgccacatcagcagcatcaccatggatccaacaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 catcaccaccaccaccagttcgcgccgccacatcagcagcatcaccatggatccaacaat 378
Query: 241 aacatcgagaacaaaaccgtttgggttggagatttgcatcactggatggacgaaaattat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aacatcgagaacaaaaccgtttgggttggagatttgcatcactggatggacgaaaattat 438
Query: 301 ctccaccgctgtttcgcttccaccggcgagatttcctccatcaa 344
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctccaccgctgtttcgcttccaccggcgagatttcctccatcaa 482
>gnl|LJGI|TC74415 similar to UniRef100_A7NTR1 Cluster: Chromosome chr18 scaffold_1,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_1, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (45%)
Length = 792
Score = 343 bits (173), Expect = 1e-93
Identities = 335/389 (86%)
Strand = Plus / Plus
Query: 262 tgggttggagatttgcatcactggatggacgaaaattatctccaccgctgtttcgcttcc 321
||||| || |||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct: 400 tgggtcggtgatttgcatcactggatggatgagaattatctccaccgctgttttgcttcc 459
Query: 322 accggcgagatttcctccatcaaagttattcgcaataagcagactggtttatcagagggt 381
| |||||||||| ||| || || ||||||||||||||| |||||| | |||||||||
Sbjct: 460 atcggcgagattaactctattaaggttattcgcaataagtctactggtctgtcagagggt 519
Query: 382 tatggatttgtggagttctattcacacgccacagctgagaaagttttacagaattatgct 441
|||||||||||||| ||||||||||| ||||||||||||||| ||||| | |||||||
Sbjct: 520 tatggatttgtggaattctattcacatagcacagctgagaaagtcttacaaacttatgct 579
Query: 442 ggagtcttgatgcccaatacagaccaacctttccgtctgaactgggcaacatttagcact 501
|| | |||||||| || || || ||||||||||| |||||||||||||||||||||||
Sbjct: 580 gggatgttgatgcctaacacggagcaacctttccgcctgaactgggcaacatttagcaca 639
Query: 502 ggggagaagacttcagataatgtttctgatctttcaattttcgtaggagatttagctgca 561
|| || ||| ||||||||||||| ||||||| || ||||| |||||||||||||||| |
Sbjct: 640 ggagacaagcgttcagataatgttcctgatctctctatttttgtaggagatttagctgga 699
Query: 562 gatgttacggatagtttgttacatgaaacatttgctagtgtatacccttcagtcaaagcc 621
|||||||| |||| |||| |||||||| ||||||| | ||||||||| || || ||
Sbjct: 700 gatgttacagataccatgttgcatgaaacttttgctaataaatacccttctgttaaggct 759
Query: 622 gcaaaagttgtttttgatgccaatactgg 650
|||||||||||||||||||||||||||||
Sbjct: 760 gcaaaagttgtttttgatgccaatactgg 788
>gnl|LJGI|TC58230 weakly similar to UniRef100_UPI00001630C7 Cluster: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding; n=1; Arabidopsis thaliana|Rep: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding - Arabidopsis thaliana, partial (41%)
Length = 832
Score = 71.9 bits (36), Expect = 7e-12
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 349 attcgcaataagcagactggtttatcagagggttatggatttgtggagttctattcacac 408
||||| |||||||| |||||| || ||||| ||||||||||||||||||||||| |
Sbjct: 555 attcggaataagcaaactggtcagtcggagggatatggatttgtggagttctattcgcga 614
Query: 409 gccacagctgagaaagttttacagaatt 436
|| |||||||||||||| || |||||||
Sbjct: 615 gcaacagctgagaaagtcttgcagaatt 642
>gnl|LJGI|TC81751 weakly similar to UniRef100_UPI00001630C7 Cluster: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding; n=1; Arabidopsis thaliana|Rep: ATRBP47A
(ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA
binding - Arabidopsis thaliana, partial (26%)
Length = 783
Score = 56.0 bits (28), Expect = 4e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 349 attcgcaataagcagactggtttatcagagggttatggatttgtggagttctattc 404
||||| |||||||| |||||| || ||||| |||||||||||||||||||||||
Sbjct: 609 attcggaataagcaaactggtcagtcggagggatatggatttgtggagttctattc 664