Miyakogusa Predicted Gene

Lj4g3v3113850.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v3113850.1 tr|A9STS4|A9STS4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_166516,26.97,9e-19,coiled-coil,NULL; seg,NULL; SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL,CUFF.52357.1
         (1044 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC72674 similar to UniRef100_A7QYT2 Cluster: Chromosome...   543   e-154
gnl|LJGI|TC75803 similar to UniRef100_A7QYT2 Cluster: Chromosome...   278   7e-74
gnl|LJGI|BP039965 similar to UniRef100_A7QYT2 Cluster: Chromosom...   151   1e-35

>gnl|LJGI|TC72674 similar to UniRef100_A7QYT2 Cluster: Chromosome undetermined
            scaffold_254, whole genome shotgun sequence; n=1; Vitis
            vinifera|Rep: Chromosome undetermined scaffold_254, whole
            genome shotgun sequence - Vitis vinifera (Grape), partial
            (17%)
          Length = 529

 Score =  543 bits (274), Expect = e-154
 Identities = 303/315 (96%)
 Strand = Plus / Plus

                                                                        
Query: 730  ccagagccattgttgcaggcnnnnnnnggtgcctccaagagtgtttggatggtgcatttg 789
            |||||| |||||||||||||       |||||||||||||||||||||||||||||||||
Sbjct: 1    ccagagtcattgttgcaggctttttttggtgcctccaagagtgtttggatggtgcatttg 60

                                                                        
Query: 790  ctagctaactcagttcatcccagcttgccaatcttcagagtggataagggtgtgagcttt 849
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61   ctagctaactcagttcatcccagcttgcccatcttcagagtggataagggtgtgagcttt 120

                                                                        
Query: 850  gattcagtttacatggaggacatggggggtgacagggcttcaaaattggtccctaacatg 909
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  gattcagtttacatggaggacatggggggtgacagggcttcaaaattggtccctaacatg 180

                                                                        
Query: 910  gtgaggatcatggtagcaccagggttttatgtgtatggcagtgcagtgaaatgtaaggtg 969
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  gtgaggatcatggtagcaccagggttttatgtgtatggcagtgcagtgaaatgtaaggtg 240

                                                                        
Query: 970  ctctgtaggtacttgagcagcagcaacaaccacagtaacaagggagaagtgaaaggttta 1029
            |||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct: 241  ctctgtaggtacttgagcagcagccacaaccacagtcaccagggagaagtgaaaggttta 300

                           
Query: 1030 accccttctccttaa 1044
            |||||||||||||||
Sbjct: 301  accccttctccttaa 315


>gnl|LJGI|TC75803 similar to UniRef100_A7QYT2 Cluster: Chromosome undetermined
           scaffold_254, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome undetermined scaffold_254,
           whole genome shotgun sequence - Vitis vinifera (Grape),
           partial (21%)
          Length = 695

 Score =  278 bits (140), Expect = 7e-74
 Identities = 185/205 (90%), Gaps = 20/205 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggattttcaggtccatcgtttccaagctcacccggaagagccccat----------- 49
           |||||||||||||||||||||||||||||||||||||||||||||||||           
Sbjct: 491 atgggattttcaggtccatcgtttccaagctcacccggaagagccccatgtcatcaagca 550

                                                                       
Query: 50  ---------ctctctcacgttcaagagaagaacagtggaaaatcgcagtggcagagcttt 100
                    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ccaccgaatctctctcacgttcaagagaagaacagtggaaaatcgcagtggcagagcttt 610

                                                                       
Query: 101 ctcacaagctggttcaagccacaagaaaaagggatgaagctcttctggaagcttcaaggc 160
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctcacaagctggttcaagccacaagaaaaagggatgaagctcttctggaagcttcaaggc 670

                                    
Query: 161 tcatgcactccatgactgagctaga 185
           |||||||||||||||||||||||||
Sbjct: 671 tcatgcactccatgactgagctaga 695


>gnl|LJGI|BP039965 similar to UniRef100_A7QYT2 Cluster: Chromosome undetermined
            scaffold_254  whole genome shotgun sequence; n=1; Vitis
            vinifera|, partial (2%)
          Length = 345

 Score =  151 bits (76), Expect = 1e-35
 Identities = 97/104 (93%)
 Strand = Plus / Minus

                                                                        
Query: 941  tgtatggcagtgcagtgaaatgtaaggtgctctgtaggtacttgagcagcagcaacaacc 1000
            |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 345  tgtatggccgtgcagtgaaatgtaaggtgctctgtaggtacttgagcagcagctactacc 286

                                                        
Query: 1001 acagtaacaagggagaagtgaaaggtttaaccccttctccttaa 1044
             | || |||||||||||||||||||||||||||||| |||||||
Sbjct: 285  cccgttacaagggagaagtgaaaggtttaaccccttttccttaa 242