Miyakogusa Predicted Gene

Lj4g3v3113320.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v3113320.1 tr|B9GYI8|B9GYI8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_555245 PE=4 SV=1,26.8,9e-18,no
description,NULL; F-box domain,F-box domain, cyclin-like;
seg,NULL,CUFF.52339.1
         (1179 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC77929                                                      577   e-164

>gnl|LJGI|TC77929 
          Length = 444

 Score =  577 bits (291), Expect = e-164
 Identities = 350/363 (96%), Gaps = 5/363 (1%)
 Strand = Plus / Plus

                                                                        
Query: 822  cttcaacttcaattatgatatttatgagctcaaggaagattactctgaatggacatggag 881
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1    cttcaacttccattatgatatttatgagctcaaggaagattactctgaatggacctggag 60

                                                                        
Query: 882  gcatcatcttgatcttaattctctgca-tagcgaaattgttgtagacataatttggttcc 940
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 61   gcatcatcttgatcttaattctctgcactagcgaaattgttgtagacataatttggttcc 120

                                                                        
Query: 941  ggtatca-gcttccg-ttaggcttatacattgttcgcacagcaaaaaaccacttgttggt 998
            ||||||| ||||||| |||||||||||| ||||||||||||| ||||||| |||||||||
Sbjct: 121  ggtatcacgcttccgcttaggcttataccttgttcgcacagccaaaaaccccttgttggt 180

                                                                        
Query: 999  gttgattgcaggtaaatatggagccatggtctatgatcctgtagacggaacttcaagaaa 1058
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 181  gttgattgcaggtaaatatggagccctggtctatgatcctgtagacggaacttcaagaaa 240

                                                                        
Query: 1059 gctgtgtgattttaggtttggctcgacttcattgttttataca-cagaatagcattca-a 1116
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  
Sbjct: 241  gctgtgtgattttaggtttggctcgacttcattgttttatacaccagaatagcattcacc 300

                                                                        
Query: 1117 cagggtgaggttcttcagtattttgaaaataatgaaaggtttgttgaattagcaaggctc 1176
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  ccgggtgaggttcttcagtattttgaaaataatgaaaggtttgttgaattagcaaggctc 360

               
Query: 1177 acc 1179
            |||
Sbjct: 361  acc 363