Miyakogusa Predicted Gene
- Lj4g3v3113190.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v3113190.1 Non Chatacterized Hit- tr|F6HQM3|F6HQM3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,26.37,1e-16,mTERF,Mitochodrial transcription termination
factor-related; Mitochondrial termination factor repeat,CUFF.52328.1
(1491 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69314 similar to UniRef100_A7PE85 Cluster: Chromosome... 1168 0.0
gnl|LJGI|TC80896 similar to UniRef100_A7PE85 Cluster: Chromosome... 628 e-179
>gnl|LJGI|TC69314 similar to UniRef100_A7PE85 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (30%)
Length = 716
Score = 1168 bits (589), Expect = 0.0
Identities = 645/655 (98%), Gaps = 9/655 (1%)
Strand = Plus / Plus
Query: 1 atgctcacaagaagaaaactcctgaacttattcacaatccccaagctaatttcccaccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 atgctcacaagaagaaaactcctgaacttattcacaatccccaagctaatttcccaccat 130
Query: 61 ctcaatgcagttccacaccccttttctccaacccctagggttttactcttctacagaacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ctcaatgcagttccacaccccttttctccaacccctagggttttactcttctacagaacg 190
Query: 121 caatcatcatcatcctcctcctccaatttccctgaatacgagatgccctctgtaacctgg 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 caatcatcatcatcct---cctccaatttccctgaatacgagatgccctctgtaacctgg 247
Query: 181 ggcgtcattcaaggccgcaaggagaagctcgtgtcgcgtgtcatcatcttcgactacctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggcgtcattcaaggccgcaaggagaagctcgtgtcgcgtgtcatcatcttcgactacctc 307
Query: 241 aagggtttgggaatcatccctgatgaattgcacgacctcgagcttccttccactgttgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aagggtttgggaatcatccctgatgaattgcacgacctcgagcttccttccactgttgat 367
Query: 301 gtcatgagggagcgcgttgagtttcttcagaagctgggtttgactgtggatgatatcaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtcatgagggagcgcgttgagtttcttcagaagctgggtttgactgtggatgatatcaac 427
Query: 361 aattaccctttgatgttgggttgcagtgtgaggaaaaacatgatccctgtgttggggtac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aattaccctttgatgttgggttgcagtgtgaggaaaaacatgatccctgtgttggggtac 487
Query: 421 ttggagaaaattgggatttctaggtctaagcttggggagtttgttaagagttaccctcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttggagaaaattgggatttctaggtctaagcttggggagtttgttaagagttaccctcag 547
Query: 481 gttttgcatgctagtgtcattgttgagcttgcccctgttgttaaattcctcagagggctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gttttgcatgctagtgtcattgttgagcttgcccctgttgttaaattcctcagagggctt 607
Query: 541 gatgtggagaggcaggatattgggtatgtgctgctgaagtaccctgagcttctagggttc 600
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 608 gatgtggagaggca-gatattgggtatgtgctgctgaagtaccctgagctt-taggg-tc 664
Query: 601 aagcttgagggtaccatgagcacttcagtggcttatcttattagtattggtgtga 655
|||||||| ||||||||||| ||||||||||| |||| |||||||||||||||||
Sbjct: 665 aagcttga-ggtaccatgagtacttcagtggc-tatc-tattagtattggtgtga 716
>gnl|LJGI|TC80896 similar to UniRef100_A7PE85 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (24%)
Length = 490
Score = 628 bits (317), Expect = e-179
Identities = 353/365 (96%), Gaps = 3/365 (0%)
Strand = Plus / Plus
Query: 1130 tagttgcgctgcgagttgagctcatgaagaacagtttttacttcttcaagactgagatgg 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagttgcgctgcgagttgagctcatgaagaacagtttttacttcttcaagactgagatgg 60
Query: 1190 ggaggcccgtaaaagagcttgtggagttccctgaatacttcacttatagtttggaatcca 1249
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggaggcccgtaaaagagcttgtagagttccctgaatacttcacttatagtttggaatcca 120
Query: 1250 ggattaaacccaggtaccagaggctaaagagcaaggggataaggtgttctttgaattgga 1309
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggattaaacccaggtaccagaggttaaagagcaaggggataaggtgttctttgaattgga 180
Query: 1310 tgctgaattgtagtgaccagagatttgaagagagattgcagggtaattacattgaatctg 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgctgaattgtagtgaccagagatttgaagagagattgcagggtaattacattgaatctg 240
Query: 1370 --aaagtgtcggtcca-tcgttctttatnnnnnnnaaattagagctacctggcaatgcga 1426
|||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 241 aaaaagtgtcggtccactcgttctttatgggggggaaattagagctacctggcaatgcga 300
Query: 1427 tattgtcagatgaagaagaggagagtgatgatgaaatgctatatagacgaactgtttctc 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tattgtcagatgaagaagaggagagtgatgatgaaatgctatatagacgaactgtttctc 360
Query: 1487 tttag 1491
|||||
Sbjct: 361 tttag 365