Miyakogusa Predicted Gene
- Lj4g3v3113120.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v3113120.1 Non Chatacterized Hit- tr|I1KQB7|I1KQB7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.45155
PE,91.92,0,Nucleoporin_C,Nucleoporin, Nup133/Nup155-like, C-terminal;
Nucleoporin_N,Nucleoporin, Nup133/Nup155-,CUFF.52325.1
(4449 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|DC598168 similar to UniRef100_A7P3V0 Cluster: Chromosom... 1096 0.0
gnl|LJGI|TC76174 similar to UniRef100_A7P3V0 Cluster: Chromosome... 975 0.0
gnl|LJGI|AV779269 similar to UniRef100_A7P3V0 Cluster: Chromosom... 432 e-120
gnl|LJGI|FS359846 similar to UniRef100_A7P3V0 Cluster: Chromosom... 389 e-106
gnl|LJGI|BP084847 homologue to UniRef100_A7P3V0 Cluster: Chromos... 111 4e-23
>gnl|LJGI|DC598168 similar to UniRef100_A7P3V0 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (13%)
Length = 557
Score = 1096 bits (553), Expect = 0.0
Identities = 556/557 (99%)
Strand = Plus / Plus
Query: 1246 tctactggaactcttatcctttctgatgcatcaccttcaactattccttcactccttgtt 1305
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctactggaactcttatcctgtctgatgcatcaccttcaactattccttcactccttgtt 60
Query: 1306 ttgaacagggattcaagcacacagtcatcatcatcaggtaatctcgggacaggaatgagg 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgaacagggattcaagcacacagtcatcatcatcaggtaatctcgggacaggaatgagg 120
Query: 1366 agttcccgggcattacgggaatctgtatcttctttaccagttgaaggaagaatgctttct 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agttcccgggcattacgggaatctgtatcttctttaccagttgaaggaagaatgctttct 180
Query: 1426 gtggcagatgttttacctttgccagatactgcagctactgtacggtctctatattcagaa 1485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtggcagatgttttacctttgccagatactgcagctactgtacggtctctatattcagaa 240
Query: 1486 attgagtttggtggttatgagaactcgatggaatcatgtgaaagggcatctggcaaactc 1545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attgagtttggtggttatgagaactcgatggaatcatgtgaaagggcatctggcaaactc 300
Query: 1546 tggtctaggggagacctctcaactcaacatatattgccgaggaggaggattgtcatcttc 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggtctaggggagacctctcaactcaacatatattgccgaggaggaggattgtcatcttc 360
Query: 1606 agcaccatgggcatgatggaaattgtttttaacaggccactggacattctaaggcgacta 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agcaccatgggcatgatggaaattgtttttaacaggccactggacattctaaggcgacta 420
Query: 1666 ttagagtcaaattctccaagatcagttttagaagatttcttcaatcgttttggtgctggc 1725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttagagtcaaattctccaagatcagttttagaagatttcttcaatcgttttggtgctggc 480
Query: 1726 gaggcagctgcaatgtgtctaatgctagctgcaagaatagtgcattctgaaaatcttatt 1785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gaggcagctgcaatgtgtctaatgctagctgcaagaatagtgcattctgaaaatcttatt 540
Query: 1786 agcaatgttattgctga 1802
|||||||||||||||||
Sbjct: 541 agcaatgttattgctga 557
>gnl|LJGI|TC76174 similar to UniRef100_A7P3V0 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (10%)
Length = 653
Score = 975 bits (492), Expect = 0.0
Identities = 495/496 (99%)
Strand = Plus / Plus
Query: 3954 tggagctgttttaccacttgacattatttgtcttcacctagagaaggctggactggagag 4013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggagctgttttaccacttgacattatttgtcttcacctagagaaggctggactggagag 60
Query: 4014 gttaaattcaggggttgaacctgttggagatgaagatgttgcaagagcccttgtttctgc 4073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttaaattcaggggttgaacctgttggagatgaagatgttgcaagagcccttgtttctgc 120
Query: 4074 ttgtaagggttcagctgaacctgttctgaatgcatatgatcaattgttatcaaacggggc 4133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttgtaagggttcagctgaacctgttctgaatgcatatgatcaattgttatcaaacggggc 180
Query: 4134 tattttgccatccccaaatcttagattgcgtttattgagatctgttctagttatactccg 4193
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tattttgccatcccctaatcttagattgcgtttattgagatctgttctagttatactccg 240
Query: 4194 tgagtgggctacgtctgtatattcccataggatgggtattggtgcctcgccttcccgagt 4253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgagtgggctacgtctgtatattcccataggatgggtattggtgcctcgccttcccgagt 300
Query: 4254 actggagggaggattctcattggaacgcacagttgctagccaaggaattcgggacaagat 4313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 actggagggaggattctcattggaacgcacagttgctagccaaggaattcgggacaagat 360
Query: 4314 cactagtgcagcaaacaggtatatgactgaagtgaggagacttgcccttccacagaacca 4373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cactagtgcagcaaacaggtatatgactgaagtgaggagacttgcccttccacagaacca 420
Query: 4374 aacagaagttgtgtatcgaggctttagagaacttgaagagtcggttattagtcctcattc 4433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aacagaagttgtgtatcgaggctttagagaacttgaagagtcggttattagtcctcattc 480
Query: 4434 atttaatcgattttga 4449
||||||||||||||||
Sbjct: 481 atttaatcgattttga 496
>gnl|LJGI|AV779269 similar to UniRef100_A7P3V0 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (4%)
Length = 554
Score = 432 bits (218), Expect = e-120
Identities = 227/230 (98%)
Strand = Plus / Minus
Query: 4220 ataggatgggtattggtgcctcgccttcccgagtactggagggaggattctcattggaac 4279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ataggatgggtattggtgcctcgccttcccgagtactggagggaggattctcattggaac 495
Query: 4280 gcacagttgctagccaaggaattcgggacaagatcactagtgcagcaaacaggtatatga 4339
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 494 gcacagttgctagccaaggaattcgggacaagatcactagtgcagccaacaggtatatga 435
Query: 4340 ctgaagtgaggagacttgcccttccacagaaccaaacagaagttgtgtatcgaggcttta 4399
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 434 ctgaagtgaggagacttgcccttccccagaacccaacagaagttgtgtatcgaggcttta 375
Query: 4400 gagaacttgaagagtcggttattagtcctcattcatttaatcgattttga 4449
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gagaacttgaagagtcggttattagtcctcattcatttaatcgattttga 325
>gnl|LJGI|FS359846 similar to UniRef100_A7P3V0 Cluster: Chromosome chr1 scaffold_5,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_5, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (9%)
Length = 715
Score = 389 bits (196), Expect = e-106
Identities = 253/272 (93%)
Strand = Plus / Minus
Query: 3949 ggtgatggagctgttttaccacttgacattatttgtcttcacctagagaaggctggactg 4008
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 715 ggtgatggagctgttttaccgcttgacattatttgttttcacctagagaaggctggactg 656
Query: 4009 gagaggttaaattcaggggttgaacctgttggagatgaagatgttgcaagagcccttgtt 4068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gagaggttaaattcaggggttgaacctgttggagatgaagatgttgcaagagcccttgtt 596
Query: 4069 tctgcttgtaagggttcagctgaacctgttctgaatgcatatgatcaattgttatcaaac 4128
||||||||||| ||| ||||||||||||| ||| | |||||||||||||||||||| ||
Sbjct: 595 tctgcttgtaatggtgcagctgaacctgtactggacgcatatgatcaattgttatcgaat 536
Query: 4129 ggggctattttgccatccccaaatcttagattgcgtttattgagatctgttctagttata 4188
||||||||||| || ||||||||||||||||| ||| | ||||| ||||||||||| |||
Sbjct: 535 ggggctatttttccttccccaaatcttagattacgtatgttgagttctgttctagtgata 476
Query: 4189 ctccgtgagtgggctacgtctgtatattccca 4220
|| | ||||||||||| |||||||||||||||
Sbjct: 475 ctacatgagtgggctatgtctgtatattccca 444
Score = 103 bits (52), Expect = 9e-21
Identities = 76/84 (90%)
Strand = Plus / Minus
Query: 4332 gtatatgactgaagtgaggagacttgcccttccacagaaccaaacagaagttgtgtatcg 4391
|||||||||||||||||||||| | ||||||||||||| ||||||| || ||||||| |
Sbjct: 336 gtatatgactgaagtgaggagattagcccttccacagagccaaacacaaagtgtgtatag 277
Query: 4392 aggctttagagaacttgaagagtc 4415
||||||||||||||| ||||||||
Sbjct: 276 aggctttagagaactcgaagagtc 253
Score = 85.7 bits (43), Expect = 2e-15
Identities = 61/67 (91%)
Strand = Plus / Minus
Query: 4256 tggagggaggattctcattggaacgcacagttgctagccaaggaattcgggacaagatca 4315
||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||
Sbjct: 435 tggagggagaattctcattggaacatccagttgctagccaaggacttcgagacaagatca 376
Query: 4316 ctagtgc 4322
|||||||
Sbjct: 375 ctagtgc 369
>gnl|LJGI|BP084847 homologue to UniRef100_A7P3V0 Cluster: Chromosome chr1 scaffold_5
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:,
partial (2%)
Length = 288
Score = 111 bits (56), Expect = 4e-23
Identities = 80/88 (90%)
Strand = Plus / Minus
Query: 4328 acaggtatatgactgaagtgaggagacttgcccttccacagaaccaaacagaagttgtgt 4387
|||||||||||||||||||||||||| | ||||||||||||| ||||||| || |||||
Sbjct: 179 acaggtatatgactgaagtgaggagattagcccttccacagagccaaacacaaagtgtgt 120
Query: 4388 atcgaggctttagagaacttgaagagtc 4415
|| |||||||||||||||| ||||||||
Sbjct: 119 atagaggctttagagaactcgaagagtc 92