Miyakogusa Predicted Gene

Lj4g3v3081730.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v3081730.1 tr|G7L8X6|G7L8X6_MEDTR Ras-related protein Rab-5C
OS=Medicago truncatula GN=MTR_8g103550 PE=3 SV=1,71.82,0,Rab subfamily
of small GTPases,Small GTPase superfamily, Rab type; Ras subfamily of
RAS small GTPase,gene.g57989.t1.1
         (420 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC80246 similar to UniRef100_A7PER1 Cluster: Chromosome...   462   e-130
gnl|LJGI|TC76825 similar to UniRef100_A7PER1 Cluster: Chromosome...    88   5e-17
gnl|LJGI|TC57678 homologue to UniRef100_Q41668 Cluster: Guanine ...    64   7e-10

>gnl|LJGI|TC80246 similar to UniRef100_A7PER1 Cluster: Chromosome chr11 scaffold_13,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr11 scaffold_13, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (92%)
          Length = 1028

 Score =  462 bits (233), Expect = e-130
 Identities = 233/233 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggaacagggaagacaagcttggttcttagatttgtcaaaggccaattttctgagtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgggaacagggaagacaagcttggttcttagatttgtcaaaggccaattttctgagtac 180

                                                                       
Query: 61  caggaatcaacaattggagcagcattcttcactcaggttttgtctttgaatgaagccacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caggaatcaacaattggagcagcattcttcactcaggttttgtctttgaatgaagccacg 240

                                                                       
Query: 121 gtgaagtttgatatatgggacactgcagggcaagaacgataccactgtttggctcctatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgaagtttgatatatgggacactgcagggcaagaacgataccactgtttggctcctatg 300

                                                                
Query: 181 tactatcgtggtgctgcttctgctatagttgtctatgacattacaagcatgga 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tactatcgtggtgctgcttctgctatagttgtctatgacattacaagcatgga 353



 Score =  291 bits (147), Expect = 2e-78
 Identities = 181/191 (94%), Gaps = 1/191 (0%)
 Strand = Plus / Plus

                                                                       
Query: 231 ggatggtgaggaatatgccaaagaaaatggtatgaccttttttgaaacttcagcaaaaac 290
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ggatggtgaggaatatgcccaagaaaatggtatgaccttttttgaaacttcagcaaaaac 533

                                                                       
Query: 291 cgcacagaatgtcaatgagctcttctatgaaatagctaagagattggcaaaagctaatcc 350
           ||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 534 cgccccgaatgtcaatgagctcttctatgaaatagctaagagattggccaaagctaatcc 593

                                                                       
Query: 351 ttcacgtcaaaccggaatcaagctg-caaagcagacctcaagaaagaagaagaatgtttt 409
           |||||||| |||||||||| ||||| | ||||||||||| || |||||||||||||||||
Sbjct: 594 ttcacgtccaaccggaatccagctgcccaagcagacctccagcaagaagaagaatgtttt 653

                      
Query: 410 gttgtgcttaa 420
           |||||||||||
Sbjct: 654 gttgtgcttaa 664


>gnl|LJGI|TC76825 similar to UniRef100_A7PER1 Cluster: Chromosome chr11 scaffold_13,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr11 scaffold_13, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (90%)
          Length = 728

 Score = 87.7 bits (44), Expect = 5e-17
 Identities = 101/120 (84%)
 Strand = Plus / Plus

                                                                       
Query: 111 tgaagccacggtgaagtttgatatatgggacactgcagggcaagaacgataccactgttt 170
           |||||| || ||||||||||| ||||||||||| ||||| || |||||||| ||  || |
Sbjct: 157 tgaagcaactgtgaagtttgacatatgggacacagcaggacaggaacgatatcatagtct 216

                                                                       
Query: 171 ggctcctatgtactatcgtggtgctgcttctgctatagttgtctatgacattacaagcat 230
           ||||||||||||||| |||||||| ||  |||| || ||||| ||||||||  |||||||
Sbjct: 217 ggctcctatgtactaccgtggtgcagcagctgcaattgttgtgtatgacatctcaagcat 276



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 302 tcaatgagctcttctatgaaatagctaagagatt 335
           |||||||||| |||||||||||||| ||||||||
Sbjct: 471 tcaatgagcttttctatgaaatagccaagagatt 504


>gnl|LJGI|TC57678 homologue to UniRef100_Q41668 Cluster: Guanine nucleotide
           regulatory protein; n=1; Vicia faba|Rep: Guanine
           nucleotide regulatory protein - Vicia faba (Broad bean),
           complete
          Length = 1059

 Score = 63.9 bits (32), Expect = 7e-10
 Identities = 95/116 (81%)
 Strand = Plus / Plus

                                                                       
Query: 109 aatgaagccacggtgaagtttgatatatgggacactgcagggcaagaacgataccactgt 168
           ||||| ||||| ||||| ||||| || |||||||| ||||| |||||  |||||||  | 
Sbjct: 310 aatgatgccacagtgaaatttgagatttgggacacagcaggacaagagagataccatagc 369

                                                                   
Query: 169 ttggctcctatgtactatcgtggtgctgcttctgctatagttgtctatgacattac 224
           |||||||| ||||| ||  | || |||||| |||||||  ||||||||||||||||
Sbjct: 370 ttggctcccatgtattacagaggcgctgctgctgctatcattgtctatgacattac 425