Miyakogusa Predicted Gene

Lj4g3v3071590.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v3071590.1 Non Chatacterized Hit- tr|J3L4B0|J3L4B0_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB01G4,40.87,1e-18,FAMILY NOT NAMED,NULL,CUFF.52216.1
         (807 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP047298                                                     567   e-161
gnl|LJGI|TC67587 weakly similar to UniRef100_A7PEM8 Cluster: Chr...    70   2e-11

>gnl|LJGI|BP047298 
          Length = 442

 Score =  567 bits (286), Expect = e-161
 Identities = 295/298 (98%)
 Strand = Plus / Minus

                                                                       
Query: 510 tccttcaaagttaggagataaacatgcacaggaagcagatgaggagttgccactttttat 569
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tccttcaaagttaggagataaacatgcacaggaagcagatgaggagttgccactttttat 383

                                                                       
Query: 570 gtacacccataagccacatcctgctcagaatttgaagccaaccacagcggttaaccatca 629
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtacacccataagccacatcctgctcagaatttgaagccaaccacagcggttaaccatca 323

                                                                       
Query: 630 taacaatttggcattggtagtgcctgttcgagacggtttgacagtcttcacaaaagttcc 689
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 taaccatttggcattggtagtgcctgttcgagacggtttgacagtcttcacaaaagttcc 263

                                                                       
Query: 690 aaatcctaaatttaatttccaaagtaagagtacccagaaggttggacgccacagcagatc 749
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaatcctaaatttaatttcccaagtaagagtacccagaaggttggacgccacagcagatc 203

                                                                     
Query: 750 cttgtatggtagtgacattttatggcccatacgacgttcaaaacgaatccaatgaaaa 807
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 202 cttgtatggtagtgacattttatggcccatacgacgttcaaaacgaatcccatgaaaa 145


>gnl|LJGI|TC67587 weakly similar to UniRef100_A7PEM8 Cluster: Chromosome chr11
           scaffold_13, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr11 scaffold_13, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (14%)
          Length = 657

 Score = 69.9 bits (35), Expect = 2e-11
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                  
Query: 284 ttgaagtccttatttctcagacaaatgcattttctgaggccgagttacgaatcca 338
           |||||| |||||| ||||| |||||||||||||||||||| |||| |||||||||
Sbjct: 1   ttgaaggccttatatctcacacaaatgcattttctgaggctgagtcacgaatcca 55