Miyakogusa Predicted Gene
- Lj4g3v3055160.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v3055160.1 tr|C0JJI3|C0JJI3_SOYBN Retrotransposon protein
OS=Glycine max PE=4 SV=1,37.18,0.000003,seg,NULL,CUFF.52193.1
(1912 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP042991 similar to UniRef100_Q0BQK3 Cluster: Two-compo... 886 0.0
gnl|LJGI|FS345157 homologue to UniRef100_A7D1F4 Cluster: Major f... 72 1e-11
>gnl|LJGI|BP042991 similar to UniRef100_Q0BQK3 Cluster: Two-component response
regulator; n=1; Granulibacter bethesdensis CGDNIH1|Rep:
Two-component response regulator - Granulobacter
bethesdensis (strain ATCC BAA-1260 / CGDNIH1), partial
(6%)
Length = 534
Score = 886 bits (447), Expect = 0.0
Identities = 447/447 (100%)
Strand = Plus / Plus
Query: 1 atgatctctatgcctcctgttcgagattcaccggttctgcccactgtgcttgatgccatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 atgatctctatgcctcctgttcgagattcaccggttctgcccactgtgcttgatgccatt 147
Query: 61 gacgccaagcttgcttccatggccaccaagttacagatcgactttgagtctaaaatttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gacgccaagcttgcttccatggccaccaagttacagatcgactttgagtctaaaatttct 207
Query: 121 actatctcaggactcattgatcaggtctcgtctctaaattgccaccttcgtgacattcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 actatctcaggactcattgatcaggtctcgtctctaaattgccaccttcgtgacattcca 267
Query: 181 ccacaacccccaccattcacatattcattcacttcctcttacccacagcctgcccctgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ccacaacccccaccattcacatattcattcacttcctcttacccacagcctgcccctgat 327
Query: 241 tactattccccttcacaaccctacatccctcaacccaacgtctctagtcaacactattat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tactattccccttcacaaccctacatccctcaacccaacgtctctagtcaacactattat 387
Query: 301 ccctacatttacccccattcttcgccacctcatgatacacagctttcattctcttcccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ccctacatttacccccattcttcgccacctcatgatacacagctttcattctcttcccca 447
Query: 361 cgagccaaatcacagcctaagcttaaaatcacagtgttcaatggatctgacccaaccatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cgagccaaatcacagcctaagcttaaaatcacagtgttcaatggatctgacccaaccatg 507
Query: 421 tggctcttaaacacagaaacgtttttc 447
|||||||||||||||||||||||||||
Sbjct: 508 tggctcttaaacacagaaacgtttttc 534
>gnl|LJGI|FS345157 homologue to UniRef100_A7D1F4 Cluster: Major facilitator
superfamily MFS_1; n=1; Halorubrum lacusprofundi ATCC
49239|Rep: Major, partial (2%)
Length = 628
Score = 71.9 bits (36), Expect = 1e-11
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 478 tttgcttttattgccctacatctagagggattcgctcttacatggttcaaattatggcgc 537
|||| |||||||||||| |||||||||||||| || | ||||||||| || | ||||||
Sbjct: 368 tttgattttattgccctgcatctagagggatttgccttgacatggttccaactgtggcgc 427
Query: 538 caccagcttgactcttgggagaaattcc 565
||||| ||||| || ||||| |||||||
Sbjct: 428 caccaacttgattcatgggacaaattcc 455