Miyakogusa Predicted Gene
- Lj4g3v3042730.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v3042730.1 Non Chatacterized Hit- tr|I1NW04|I1NW04_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,52.17,0.0000000000007,DUF1005,Protein of unknown function
DUF1005; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NU,CUFF.52164.1
(1494 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC66558 similar to UniRef100_A7PEF0 Cluster: Chromosome... 1100 0.0
gnl|LJGI|FS337739 similar to UniRef100_O04626 Cluster: F2P16.20 ... 242 5e-63
gnl|LJGI|TC63548 similar to UniRef100_O04626 Cluster: F2P16.20 p... 234 1e-60
gnl|LJGI|AV780998 similar to UniRef100_A7PEF0 Cluster: Chromosom... 119 5e-26
>gnl|LJGI|TC66558 similar to UniRef100_A7PEF0 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (23%)
Length = 589
Score = 1100 bits (555), Expect = 0.0
Identities = 579/587 (98%)
Strand = Plus / Plus
Query: 112 ttcattctagtccacaaaggtgcatgtagatgtttcccaagttgctgtctctcttcttcc 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ttcattctagtccacaaaggtgcatgtagatgtttcccaagttgctgtctctcttcttcc 62
Query: 172 accaccactctctctgtctttgattatcaacaattcaacatcaacatggatccatgccct 231
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 63 accaccactctctctgtctttgattatcaacagttcaacatcaacatggatccatgccct 122
Query: 232 ttcgttcgcctcatggttgaatctctctccctcaaactcccctctccggccaaaccacca 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ttcgttcgcctcatggttgaatctctctccctcaaactcccctctccggccaaaccacca 182
Query: 292 cctctctccggcgtccacccttcaaccactccatgcttctgcgaaattcagattcacaag 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 cctctctccggcgtccacccttcaaccactccatgcttctgcgaaattcagattcacaag 242
Query: 352 tctcttccaattcacactgcccttcttcccctttcttcctcctctgctcccgactccacc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tctcttccaattcacactgcccttcttcccctttcttcctcctctgctcccgactccacc 302
Query: 412 gcatccacctccgcccccgccttccaccttgactccgccgcaatccgccgcctctccgcc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gcatccacctccgcccccgccttccaccttgactccgccgcaatccgccgcctctccgcc 362
Query: 472 aagcccctcaccgtctccatctccgtctacaacggacgtaagggccgcacgtgcggcgtc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aagcccctcaccgtctccatctccgtctacaacggacgtaagggccgcacgtgcggcgtc 422
Query: 532 cgctccgccaagtttctcggccgtgtccgtctcaccgttcacctgaactccgccctctct 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cgctccgccaagtttctcggccgtgtccgtctcaccgttcacctgaactccgccctctct 482
Query: 592 gggtttaacacattccagagtgggtggttcaagttggccaggaacggtgtcggaccgggc 651
|| | |||||||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct: 483 ggctctaacacattccacagcgggtggttcaagttggccaggaacggtgacggaccggga 542
Query: 652 actgataagcaatcagctcagcttcatcttgtggtccggtctgaacc 698
| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aatgataagcaatcagctcagcttcatcttgtggtccggtctgaacc 589
>gnl|LJGI|FS337739 similar to UniRef100_O04626 Cluster: F2P16.20 protein; n=1;
Arabidopsis thaliana|Rep: F2P16.20 protein - Arabidopsis
thaliana (Mouse-ear cress), partial (6%)
Length = 759
Score = 242 bits (122), Expect = 5e-63
Identities = 216/249 (86%), Gaps = 15/249 (6%)
Strand = Plus / Plus
Query: 392 cctctgctcccgactccaccgcatccacctccgcccccgccttccaccttgactccgccg 451
|||||||||||| |||||||||||||||||| | ||||||||||||||| |||||||
Sbjct: 49 cctctgctcccgcctccaccgcatccacctctgtccccgccttccacctcgactccg--- 105
Query: 452 caatccgccgcctctccgccaagcccctcaccgtctccatctccgtctacaacggacgta 511
||||||||| |||||||||||||| ||||||||||||||| |||||| || |
Sbjct: 106 -------ccgcctctctgccaagcccctcactctctccatctccgtctgcaacggccgca 158
Query: 512 agggccgcacgtgcggcgtccgctccgccaagtttctcggccgtgtccgtctcaccgttc 571
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 159 agggccgcacgtgcggcgtccgctccgccaagtttctcggccgtgtccgcctcaccgttc 218
Query: 572 acctgaactccgccctctctgggtttaacacattccagagtgggtggttcaagttggcca 631
|||| ||| |||||||||| | ||||||||| |||||||||||||| |||||||
Sbjct: 219 acctcaacaccgccctctc-----acagcacattccatagtgggtggttcaaattggcca 273
Query: 632 ggaacggtg 640
|||||||||
Sbjct: 274 ggaacggtg 282
>gnl|LJGI|TC63548 similar to UniRef100_O04626 Cluster: F2P16.20 protein; n=1;
Arabidopsis thaliana|Rep: F2P16.20 protein - Arabidopsis
thaliana (Mouse-ear cress), partial (4%)
Length = 707
Score = 234 bits (118), Expect = 1e-60
Identities = 215/249 (86%), Gaps = 15/249 (6%)
Strand = Plus / Plus
Query: 392 cctctgctcccgactccaccgcatccacctccgcccccgccttccaccttgactccgccg 451
|||||||||||| |||||||||||||||||| | ||||||||||||||| |||||||
Sbjct: 47 cctctgctcccgcctccaccgcatccacctctgtccccgccttccacctcgactccg--- 103
Query: 452 caatccgccgcctctccgccaagcccctcaccgtctccatctccgtctacaacggacgta 511
||||||||| |||||||||||||| ||||||||||||||| |||||| || |
Sbjct: 104 -------ccgcctctctgccaagcccctcactctctccatctccgtctgcaacggccgca 156
Query: 512 agggccgcacgtgcggcgtccgctccgccaagtttctcggccgtgtccgtctcaccgttc 571
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 157 agggccgcacgtgcggcgtccgctccaccaagtttctcggccgtgtccgcctcaccgttc 216
Query: 572 acctgaactccgccctctctgggtttaacacattccagagtgggtggttcaagttggcca 631
|||| ||| |||||||||| | ||||||||| |||||||||||||| |||||||
Sbjct: 217 acctcaacaccgccctctc-----acagcacattccatagtgggtggttcaaattggcca 271
Query: 632 ggaacggtg 640
|||||||||
Sbjct: 272 ggaacggtg 280
>gnl|LJGI|AV780998 similar to UniRef100_A7PEF0 Cluster: Chromosome chr11 scaffold_13,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_13, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 488
Score = 119 bits (60), Expect = 5e-26
Identities = 96/108 (88%)
Strand = Plus / Minus
Query: 1369 atggctgatgctgctcttttcattgcactctctgctgctattgatcttagcatggatgct 1428
||||||||||||||||| |||||||| || || ||||| |||||||||||||||||||||
Sbjct: 480 atggctgatgctgctctcttcattgctctttcagctgccattgatcttagcatggatgct 421
Query: 1429 tgcatgcttttctctcataaacttaggaaggagctttgccatgatgaa 1476
||| ||||||||| || ||||| ||||||||||||| |||| |||||
Sbjct: 420 tgccagcttttctcacagaaactcaggaaggagctttaccatcatgaa 373