Miyakogusa Predicted Gene
- Lj4g3v3017370.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v3017370.2 Non Chatacterized Hit- tr|A2WM27|A2WM27_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,27.82,2e-18,Transposase_24,Transposase, Ptta/En/Spm, plant;
coiled-coil,NULL; seg,NULL,CUFF.52154.2
(1146 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC79020 319 2e-86
gnl|LJGI|TC82440 200 1e-50
gnl|LJGI|BP056618 137 2e-31
gnl|LJGI|DC594663 similar to UniRef100_Q27900 Cluster: DNA-direc... 115 6e-25
gnl|LJGI|GO012943 weakly similar to UniRef100_Q0J397 Cluster: Os... 52 8e-06
>gnl|LJGI|TC79020
Length = 486
Score = 319 bits (161), Expect = 2e-86
Identities = 176/181 (97%)
Strand = Plus / Plus
Query: 966 agctgaatctactcaattaaatgaagaacttaattctctaaagactaagttagccgcctc 1025
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 agctgaatctactcaattaaatgaagaacttaattctgtaaagactaagttagccgcctc 60
Query: 1026 agatgagaatatcaagacgttgcaaactgtactttttgcatacatgcaaatgaaggaagg 1085
|||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 61 agatgagaatatcaagaccttgccaactgtactttttgcatacatgccaatgaaggaagg 120
Query: 1086 acatatcgctgcaaacttggcagctttgtttgggaattttactaaaatggatcaagggaa 1145
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acatatcgctgccaacttggcagctttgtttgggaattttactaaaatggatcaagggaa 180
Query: 1146 t 1146
|
Sbjct: 181 t 181
>gnl|LJGI|TC82440
Length = 433
Score = 200 bits (101), Expect = 1e-50
Identities = 125/133 (93%)
Strand = Plus / Plus
Query: 786 ggtgttggttgagcaagagctaagtcaaacacttgatttctccgaggtttcaaaaaatga 845
||||||||||||| |||||||||| ||||||||||||| ||| ||||||||||| ||||
Sbjct: 165 ggtgttggttgagtaagagctaagccaaacacttgattcctcttaggtttcaaaatatga 224
Query: 846 cgcccttgccaaagttttggggccagatcactctggatgtgtgcgaggactaggtgtagg 905
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 225 cgcccttgccaaagttttggggccagatcattctgcatgtgtgcgaggactaggtgtagg 284
Query: 906 agctcttcatagt 918
|||||||||||||
Sbjct: 285 agctcttcatagt 297
>gnl|LJGI|BP056618
Length = 524
Score = 137 bits (69), Expect = 2e-31
Identities = 144/169 (85%)
Strand = Plus / Minus
Query: 120 atggactgtacaagctatagatgaacatggaaaccaaaagacgatccaattgacaataac 179
||||||||||||||||||||||||||| || ||| ||| || ||| ||| |||| | |
Sbjct: 270 atggactgtacaagctatagatgaacaaggcaacgaaatgaagattcaagtgacgaatcc 211
Query: 180 agatgtgtttgatatgcctaaaggtcagctcataattgtgccgtttgataggcaaaggcg 239
| ||| |||||||||||| ||||||||| |||| | || || ||||||||||||| |||
Sbjct: 210 gggtgtatttgatatgcctcaaggtcagcgcatagtggtaccatttgataggcaaatgcg 151
Query: 240 agcttgtggacaagctgcagcactcctttcaggagcttgtggccgtatt 288
||| |||||| |||| |||||||||||||||||||||||||| ||||||
Sbjct: 150 agcctgtggagaagcagcagcactcctttcaggagcttgtggacgtatt 102
>gnl|LJGI|DC594663 similar to UniRef100_Q27900 Cluster: DNA-directed RNA polymerase;
n=1; Euplotes octocarinatus|Rep: DNA-directed RNA
polymerase, partial (2%)
Length = 552
Score = 115 bits (58), Expect = 6e-25
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 1 atgcctcatatggagccaccactaccccattctcaagcacatgttccatcatttggta 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atgcctcatatggagccaccactaccccattctcaagcacatgttccatcatttggta 500
>gnl|LJGI|GO012943 weakly similar to UniRef100_Q0J397 Cluster: Os09g0244100 protein;
n=1; Oryza sativa Japonica Group|Rep: Os09g0244100
protein - Oryza sativa subsp. japonica (Rice), partial
(3%)
Length = 643
Score = 52.0 bits (26), Expect = 8e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 atgcctcatatggagccaccactacc 26
||||||||||||||||||||||||||
Sbjct: 618 atgcctcatatggagccaccactacc 643