Miyakogusa Predicted Gene

Lj4g3v3014230.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v3014230.1 tr|B6U757|B6U757_MAIZE RNA polymerase II
transcriptional coactivator KELP OS=Zea mays PE=2
SV=1,60,3e-17,seg,NULL; RNA POLYMERASE II TRANSCRIPTIONAL
COACTIVATOR,NULL; ssDNA-binding transcriptional regulato,CUFF.52046.1
         (486 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73726 similar to UniRef100_A7QU76 Cluster: Chromosome...   963   0.0  
gnl|LJGI|TC81260 similar to UniRef100_A7PDR5 Cluster: Chromosome...   196   9e-50
gnl|LJGI|BP038600                                                      58   5e-08
gnl|LJGI|TC74643 similar to UniRef100_A7PHE6 Cluster: Chromosome...    58   5e-08

>gnl|LJGI|TC73726 similar to UniRef100_A7QU76 Cluster: Chromosome chr2 scaffold_176,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr2 scaffold_176, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (54%)
          Length = 894

 Score =  963 bits (486), Expect = 0.0
 Identities = 486/486 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggagaatgatcccgaaaccaaagcaagaatcgaggaagctgttcggaagattctcgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 atggagaatgatcccgaaaccaaagcaagaatcgaggaagctgttcggaagattctcgaa 160

                                                                       
Query: 61  gaatcaaacatggacgaggtcaccgagtccaagattcgcaagcaagcctccactgaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 gaatcaaacatggacgaggtcaccgagtccaagattcgcaagcaagcctccactgaactc 220

                                                                       
Query: 121 ggcctcgacctctctgttccacccttcaaagccttcgtcaagcaggtcgtgcaagctttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ggcctcgacctctctgttccacccttcaaagccttcgtcaagcaggtcgtgcaagctttt 280

                                                                       
Query: 181 ctcgaagagaagcaacagcagctggaagaacaacaacaagaggaaggaggaggagttacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ctcgaagagaagcaacagcagctggaagaacaacaacaagaggaaggaggaggagttacc 340

                                                                       
Query: 241 caggacaaggagttcgatgatgatggcgatctcatcatctgcaagctttcggagaagagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 caggacaaggagttcgatgatgatggcgatctcatcatctgcaagctttcggagaagagg 400

                                                                       
Query: 301 aaggtgacgattcaggatttcagagggaaaacactggtctccattcgggagtattacaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aaggtgacgattcaggatttcagagggaaaacactggtctccattcgggagtattacaga 460

                                                                       
Query: 361 aaggatgggaaggacttacctacttcaaaaggaataagtttgacagaggagcagtggtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aaggatgggaaggacttacctacttcaaaaggaataagtttgacagaggagcagtggtct 520

                                                                       
Query: 421 acattcaagaaaaatgtgcctgccgtagaaaaagccattgagaaaatggagtcacgcata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 acattcaagaaaaatgtgcctgccgtagaaaaagccattgagaaaatggagtcacgcata 580

                 
Query: 481 taagga 486
           ||||||
Sbjct: 581 taagga 586


>gnl|LJGI|TC81260 similar to UniRef100_A7PDR5 Cluster: Chromosome chr11 scaffold_13,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr11 scaffold_13, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (17%)
          Length = 519

 Score =  196 bits (99), Expect = 9e-50
 Identities = 123/131 (93%)
 Strand = Plus / Plus

                                                                       
Query: 352 tattacagaaaggatgggaaggacttacctacttcaaaaggaataagtttgacagaggag 411
           ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1   tattacagaaaggatggcaaggacctacctacttcaaaaggaataagtttgacagaggag 60

                                                                       
Query: 412 cagtggtctacattcaagaaaaatgtgcctgccgtagaaaaagccattgagaaaatggag 471
           |||||||| || |||||||||| ||||||||||  |||||||||||||||||||||||| 
Sbjct: 61  cagtggtcaaccttcaagaaaagtgtgcctgccaaagaaaaagccattgagaaaatggac 120

                      
Query: 472 tcacgcatata 482
           |||||||||||
Sbjct: 121 tcacgcatata 131


>gnl|LJGI|BP038600 
          Length = 558

 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 295 aagaggaaggtgacgattcaggatttcagagggaaaacactggtc 339
           ||||| || |||| |||||||||||| ||||||||||||||||||
Sbjct: 116 aagagaaaagtgaagattcaggatttaagagggaaaacactggtc 160


>gnl|LJGI|TC74643 similar to UniRef100_A7PHE6 Cluster: Chromosome chr17 scaffold_16,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr17 scaffold_16, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (17%)
          Length = 1106

 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 295 aagaggaaggtgacgattcaggatttcagagggaaaacactggtc 339
           ||||| || |||| |||||||||||| ||||||||||||||||||
Sbjct: 116 aagagaaaagtgaagattcaggatttaagagggaaaacactggtc 160