Miyakogusa Predicted Gene
- Lj4g3v2977950.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2977950.1 Non Chatacterized Hit- tr|I1JHD5|I1JHD5_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,65.38,0.027,
,CUFF.52130.1
(313 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73697 347 2e-95
gnl|LJGI|TC79558 similar to UniRef100_Q5CXR5 Cluster: Splicing f... 252 1e-66
gnl|LJGI|TC69892 188 1e-47
>gnl|LJGI|TC73697
Length = 486
Score = 347 bits (175), Expect = 2e-95
Identities = 196/203 (96%)
Strand = Plus / Plus
Query: 111 cggaggcgcgacacccctgccgtggcggcgcggtcgaagctcggtggtgatggcggtgga 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggaggcgcgacacccctgccgtggcggcgcggtcgaagctcggtggtgatggcggtgga 60
Query: 171 acaagcagcggtaaggaagaatcccgattcagtctggtattggagtttggagatgttatt 230
|| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 61 accagccgcggtaaggaagaatcccgattccgtctggtattggagtttggagatgttatt 120
Query: 231 cctccttcatctcttttatgacatggtgcaacatggtttcttgcctgatgagcttttgct 290
|||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||
Sbjct: 121 cctccttcatctcttttatgacctggtgccacctggtttcttgcctgatgagcttttgct 180
Query: 291 ttcgaagatcttgcaagcgtgag 313
|||||||||||||| ||||||||
Sbjct: 181 ttcgaagatcttgccagcgtgag 203
>gnl|LJGI|TC79558 similar to UniRef100_Q5CXR5 Cluster: Splicing factor with 3 RRM
domains; n=1; Cryptosporidium parvum Iowa II|Rep:
Splicing factor with 3 RRM domains - Cryptosporidium
parvum Iowa II, partial (3%)
Length = 1015
Score = 252 bits (127), Expect = 1e-66
Identities = 202/227 (88%)
Strand = Plus / Plus
Query: 20 cagaggcaaagcagatcgtgaaggaagaagactatgatggaggaagggagatcgagggtg 79
|||||| | ||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 253 cagaggtagagcagatcgcgaaggaagaagactgcgatggaggaagggagatcgagggtg 312
Query: 80 agaagacccacgaccacagtgatggctccggcggaggcgcgacacccctgccgtggcggc 139
|||||||||||||||||| ||||| ||||||| ||||||||||| |||| |||| || |
Sbjct: 313 agaagacccacgaccacaatgatgcctccggcagaggcgcgacatccctaccgtaacgac 372
Query: 140 gcggtcgaagctcggtggtgatggcggtggaacaagcagcggtaaggaagaatcccgatt 199
||||| |||| | || ||||| || |||||||||||||| || ||||||||||| |||||
Sbjct: 373 gcggttgaagattggcggtgacggtggtggaacaagcagtggcaaggaagaatctcgatt 432
Query: 200 cagtctggtattggagtttggagatgttattcctccttcatctcttt 246
|| | |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 433 cattttggtattggagtttggagttgttattcctccttcatctcttt 479
>gnl|LJGI|TC69892
Length = 579
Score = 188 bits (95), Expect = 1e-47
Identities = 119/127 (93%)
Strand = Plus / Minus
Query: 32 agatcgtgaaggaagaagactatgatggaggaagggagatcgagggtgagaagacccacg 91
|||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 418 agatcgcgaaggaagaagattgcgatggaggaagggagatcgagggtgagaagacccacg 359
Query: 92 accacagtgatggctccggcggaggcgcgacacccctgccgtggcggcgcggtcgaagct 151
||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 358 gccacagtgacggctccggcggaggcgcgacatccctgccgtggcggcgcgatcgaagct 299
Query: 152 cggtggt 158
|||||||
Sbjct: 298 cggtggt 292