Miyakogusa Predicted Gene
- Lj4g3v2928710.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2928710.2 tr|A9TN20|A9TN20_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,29.22,9e-18,S1,Ribosomal protein S1, RNA-binding domain;
Nucleic acid-binding proteins,Nucleic acid-binding, OB-,CUFF.51877.2
(2214 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC66199 similar to UniRef100_A7QKJ5 Cluster: Chromosome... 1136 0.0
gnl|LJGI|TC82681 weakly similar to UniRef100_A7QKJ5 Cluster: Chr... 410 e-113
>gnl|LJGI|TC66199 similar to UniRef100_A7QKJ5 Cluster: Chromosome chr2 scaffold_112,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_112, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (6%)
Length = 636
Score = 1136 bits (573), Expect = 0.0
Identities = 585/589 (99%)
Strand = Plus / Plus
Query: 289 gagaaatccttttataagaagaagggtaaagttgtggagatagaggaacttccatttgag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagaaatccttttataagaagaagggtaaagttgtggagatagaggaacttccatttgag 60
Query: 349 ggttctaagggaaggaagttatctactaaattggatgacttgggtttggttcgacctgtt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggttctaagggaaggaagttatctactaaattggatgacttgggtttggttcgacctgtt 120
Query: 409 ccggccaaaggatccacattcaaacctgattataacaaacctgcattggagattaagaga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccggccaaaggatccacattcaaacctgattataacaaacctgcattggagattaagaga 180
Query: 469 cctgtccggacggaaagtaaggaaggggatgttagaaaaattggtgttcctaatgttgct 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cctgtccggacggaaagtaaggaaggggatgttagaaaaattggtgttcctaatgttgct 240
Query: 529 ctgcgaaagccaaccgtgtataaagaggatgacgatgaagacttttcctcgaggcggagg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 241 ctgcgaaagccaaccgtgtataaagaggatgacgatgaagacttttcctcgaggctgagg 300
Query: 589 atgaaaccgaatttggcgctgaaaatgagcagcgagccagtgagcgagaactttggtgac 648
||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 301 atgaaaccgaatttgtcgctgaaaatgaggagcgagccagtgagcgagaagtttggtgac 360
Query: 649 atgacattgttgaagaaacctggactaccagttcccaagaatgaagctatgacccaagag 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgacattgttgaagaaacctggactaccagttcccaagaatgaagctatgacccaagag 420
Query: 709 ccttcttctcttttgggtgatcagaggaacaatgatagtgagttgaagatgtggaaagaa 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccttcttctcttttgggtgatcagaggaacaatgatagtgagttgaagatgtggaaagaa 480
Query: 769 gagtcaagtgatgaaattggtaacttgacattgttggaacagccacacaaaccaatcagc 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gagtcaagtgatgaaattggtaacttgacattgttggaacagccacacaaaccaatcagc 540
Query: 829 aaaaaagaagagcagtttgaggatgagaaagttgtagtcccaaatgagg 877
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaaaaagaagagcagtttgaggatgagaaagttgtagtcccaaatgagg 589
Score = 71.9 bits (36), Expect = 2e-11
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 789 taacttgacattgttggaacagccacacaaaccaatcagc 828
||||||||| ||||||||||||||||||||||||||||||
Sbjct: 597 taacttgacgttgttggaacagccacacaaaccaatcagc 636
>gnl|LJGI|TC82681 weakly similar to UniRef100_A7QKJ5 Cluster: Chromosome chr2
scaffold_112, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr2 scaffold_112, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (11%)
Length = 868
Score = 410 bits (207), Expect = e-113
Identities = 240/254 (94%)
Strand = Plus / Plus
Query: 1703 tttttgttgaggttgaaggagttcctgcactgattcatcagtcagaaatatcatgggatg 1762
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 615 ttttttttgaggttgaagganttcctgcactgattcatcagtcanaaatatcatgggatg 674
Query: 1763 ccactttgaacccaacatcatattttaagattggacaggttgtagaggcaaaagttcacc 1822
|||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||
Sbjct: 675 ccactttgaacccaacatcatattttaaaattggacaggttgtaaaggcaaaanttcacc 734
Query: 1823 agttaaactttgcacttaaacggatatttttatcattaaaggaggtcatgcctgatccat 1882
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 anttaaactttgcacttaaacggatatttttatcattaaaggaggtcatgcctgatccat 794
Query: 1883 tgatgaatgccttggagtctgttgttgggggtcatgaccccttagacgggagaatggaag 1942
|||||||||||||||| |||||||||||||||||| |||||||| |||||| |||||||
Sbjct: 795 tgatgaatgccttggantctgttgttgggggtcatnaccccttanacggganaatggaaa 854
Query: 1943 aagcccaaacggat 1956
|| |||| ||||||
Sbjct: 855 aaccccanacggat 868