Miyakogusa Predicted Gene
- Lj4g3v2917670.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2917670.1 Non Chatacterized Hit- tr|I1KP78|I1KP78_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.19091
PE,73.39,0,DEAD-like helicases superfamily,Helicase, superfamily 1/2,
ATP-binding domain; helicase superfamily
,NODE_71893_length_2135_cov_11.382669.path2.1
(1908 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC71902 similar to UniRef100_A7QKJ8 Cluster: Chromosome... 735 0.0
gnl|LJGI|TC60519 similar to UniRef100_A7QKJ8 Cluster: Chromosome... 593 e-168
gnl|LJGI|AV778668 similar to UniRef100_Q6K7R9 Cluster: DEAD-box ... 232 6e-60
gnl|LJGI|AV767433 homologue to UniRef100_A7PZU7 Cluster: Chromos... 56 8e-07
>gnl|LJGI|TC71902 similar to UniRef100_A7QKJ8 Cluster: Chromosome chr2 scaffold_112,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_112, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 607
Score = 735 bits (371), Expect = 0.0
Identities = 371/371 (100%)
Strand = Plus / Plus
Query: 1538 gaagaacagggcgggaaggcaaagaaggggaaggcatattgttgattgctccatgggaag 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagaacagggcgggaaggcaaagaaggggaaggcatattgttgattgctccatgggaag 60
Query: 1598 aatattttttagatgaaatcaaggatctccctctaaagaaaatccccttaccagatatag 1657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatattttttagatgaaatcaaggatctccctctaaagaaaatccccttaccagatatag 120
Query: 1658 atccacaggcaaagctcaagattgagcattcaatggaaaagattgatgatgatattaaag 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atccacaggcaaagctcaagattgagcattcaatggaaaagattgatgatgatattaaag 180
Query: 1718 aagcagcatatcatggttggcttggttattataactccatcagggaaatcgggagggaga 1777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagcagcatatcatggttggcttggttattataactccatcagggaaatcgggagggaga 240
Query: 1778 agacaactattgctgacctggcgaaccgattttcagaatcaattggtttacagagacctc 1837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agacaactattgctgacctggcgaaccgattttcagaatcaattggtttacagagacctc 300
Query: 1838 ctgctctcttccgaaaaactgcacttaaaatgggtttgaaggacattcctggcattagaa 1897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctgctctcttccgaaaaactgcacttaaaatgggtttgaaggacattcctggcattagaa 360
Query: 1898 ttcgtagatag 1908
|||||||||||
Sbjct: 361 ttcgtagatag 371
>gnl|LJGI|TC60519 similar to UniRef100_A7QKJ8 Cluster: Chromosome chr2 scaffold_112,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_112, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (16%)
Length = 846
Score = 593 bits (299), Expect = e-168
Identities = 305/307 (99%)
Strand = Plus / Plus
Query: 96 gaacctagcaccagttgatttgcgcaaactcataccccaacattcgaatcagaatttggc 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gaacctagcaccagttgatttgcgcaaactcataccccaacattcgaatcagaatttggc 599
Query: 156 gagtttttcgcaggctagggaataccgggctgttcctgaggttagaaaatcggatgccag 215
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 600 gagtttttcgcaggctagggaataccgggctgttcctgaggttagaaattcggatgccag 659
Query: 216 cgcgggcaagcatagaatttggaggagggaccctagtgatagttcttgtagtgagggtga 275
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 cgcgggcaagcgtagaatttggaggagggaccctagtgatagttcttgtagtgagggtga 719
Query: 276 gggtgaaatggaatcgaagagtcacggttcgaagatgggtggggttagtattgcttcttt 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gggtgaaatggaatcgaagagtcacggttcgaagatgggtggggttagtattgcttcttt 779
Query: 336 ggggaagtatgatgtgaagaaggagaggagggtgatgccgaagtcatatgatgagggaag 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ggggaagtatgatgtgaagaaggagaggagggtgatgccgaagtcatatgatgagggaag 839
Query: 396 tgatttt 402
|||||||
Sbjct: 840 tgatttt 846
Score = 93.7 bits (47), Expect = 4e-18
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 1 atgaaagaaggcgcactagacctctggaaccaccaggatggtccctt 47
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgaaagaaggcgcactagacctctggaaccaccaggatggtccctt 491
>gnl|LJGI|AV778668 similar to UniRef100_Q6K7R9 Cluster: DEAD-box ATP-dependent RNA
helicase 48; n=1; Oryza sativa Japonica Group|Rep:
DEAD-box ATP-dependent RNA helicase 48 - Oryza sativa
subsp. japonica (Rice), partial (5%)
Length = 445
Score = 232 bits (117), Expect = 6e-60
Identities = 142/149 (95%), Gaps = 1/149 (0%)
Strand = Plus / Minus
Query: 1761 ggaaatcgggagggagaagacaactattgctgacctggcgaaccgattttcagaatcaat 1820
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 ggaaatcgggagggagaagaccactattgctgacctggcgaaccgattttcagaatccat 386
Query: 1821 tggtttacagagacctcctgctctcttccgaaaaactgcacttaaaatgggtttgaagga 1880
|||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 385 tggtttaccgagacctcctgctctctttcgtaaaactgcacttaaaatgggtttgaagga 326
Query: 1881 cattcctggcattag-aattcgtagatag 1908
|||||||||| |||| |||||||||||||
Sbjct: 325 cattcctggccttagaaattcgtagatag 297
>gnl|LJGI|AV767433 homologue to UniRef100_A7PZU7 Cluster: Chromosome chr15
scaffold_40, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr15 scaffold_40, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (17%)
Length = 383
Score = 56.0 bits (28), Expect = 8e-07
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 883 tgccagattcttgttgctacacctggaaggttgctggaccatgttgagaata 934
|||||||| ||||||||||||||||||||| | ||| |||||||||||||
Sbjct: 33 tgccagatccttgttgctacacctggaaggcttagggatcatgttgagaata 84