Miyakogusa Predicted Gene
- Lj4g3v2827890.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2827890.1 tr|A9SFF6|A9SFF6_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,38.32,0.0000001,RINGv,Zinc finger, RING-CH-type;
RING/U-box,NULL; no description,Zinc finger, RING/FYVE/PHD-type;
Th,CUFF.51740.1
(1074 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO031813 similar to UniRef100_A7PKR0 Cluster: Chromosom... 993 0.0
gnl|LJGI|DC594408 weakly similar to UniRef100_A7PKR0 Cluster: Ch... 747 0.0
gnl|LJGI|TC73879 similar to UniRef100_A7PKR0 Cluster: Chromosome... 660 0.0
>gnl|LJGI|GO031813 similar to UniRef100_A7PKR0 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (32%)
Length = 728
Score = 993 bits (501), Expect = 0.0
Identities = 508/509 (99%), Gaps = 1/509 (0%)
Strand = Plus / Plus
Query: 1 atgggtggtggagaaaatgtgtcagcaatgccaaaggaaaaactccgtaatgaaagctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 atgggtggtggagaaaatgtgtcagcaatgccaaaggaaaaactccgtaatgaaagctcc 280
Query: 61 tcaagtgttgaaactggggatttagaatctcactctcgccttagcctcgagaaggaagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tcaagtgttgaaactggggatttagaatctcactctcgccttagcctcgagaaggaagta 340
Query: 121 gccttggaaagttgccgggtatgccagtgtgctgaatctgataaaagaggggatgctgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gccttggaaagttgccgggtatgccagtgtgctgaatctgataaaagaggggatgctgcc 400
Query: 181 ctagaatttctgggcatcattccagttttagagagcaaaggggaagaagtagggtctgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctagaatttctgggcatcattccagttttagagagcaaaggggaagaagtagggtctgat 460
Query: 241 ggcgtggggattgcgaaagataaccgaaatgttgagaacgaatctcgggtggtggaattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ggcgtggggattgcgaaagataaccgaaatgttgagaacgaatctcgggtggtggaattt 520
Query: 301 gttagcccggatggcgaggttttcgtttgtaagagtgatttggaactggggttgtctcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gttagcccggatggcgaggttttcgtttgtaagagtgatttggaactggggttgtctcat 580
Query: 361 caagatacgttagttgagctcggttgttgttgtaaaaatgatcttgcgttagtacattat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 caagatacgttagttgagctcggttgttgttgtaaaaatgatcttgcgttagtacattat 640
Query: 421 gcgtgcgcgcttaagtggtttattaaccatggatctacaatttgtgaaatatgtggacat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gcgtgcgcgcttaagtggtttattaaccatggatctacaatttgtgaaatatgtggacat 700
Query: 481 atagcgagtaatatcagaatatctgactt 509
||||||||||||||||| |||||||||||
Sbjct: 701 atagcgagtaatatcag-atatctgactt 728
>gnl|LJGI|DC594408 weakly similar to UniRef100_A7PKR0 Cluster: Chromosome chr7
scaffold_20, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr7 scaffold_20, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (18%)
Length = 579
Score = 747 bits (377), Expect = 0.0
Identities = 386/389 (99%)
Strand = Plus / Plus
Query: 1 atgggtggtggagaaaatgtgtcagcaatgccaaaggaaaaactccgtaatgaaagctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 atgggtggtggagaaaatgtgtcagcaatgccaaaggaaaaactccgtaatgaaagctcc 250
Query: 61 tcaagtgttgaaactggggatttagaatctcactctcgccttagcctcgagaaggaagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tcaagtgttgaaactggggatttagaatctcactctcgccttagcctcgagaaggaagta 310
Query: 121 gccttggaaagttgccgggtatgccagtgtgctgaatctgataaaagaggggatgctgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gccttggaaagttgccgggtatgccagtgtgctgaatctgataaaagaggggatgctgcc 370
Query: 181 ctagaatttctgggcatcattccagttttagagagcaaaggggaagaagtagggtctgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 371 ctagaatttctgggcatcattccagttttagagagcaaaggggaagaagtattgtcttat 430
Query: 241 ggcgtggggattgcgaaagataaccgaaatgttgagaacgaatctcgggtggtggaattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggcgtggggattgcgaaagataaccgaaatgttgagaacgaatctcgggtggtggaattt 490
Query: 301 gttagcccggatggcgaggttttcgtttgtaagagtgatttggaactggggttgtctcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gttagcccggatggcgaggttttcgtttgtaagagtgatttggaactggggttgtctcat 550
Query: 361 caagatacgttagttgagctcggttgttg 389
|||||||||||||||||||||||||||||
Sbjct: 551 caagatacgttagttgagctcggttgttg 579
>gnl|LJGI|TC73879 similar to UniRef100_A7PKR0 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (34%)
Length = 593
Score = 660 bits (333), Expect = 0.0
Identities = 339/341 (99%)
Strand = Plus / Plus
Query: 723 acaggttgtttcggagcatcctttgaatattgtcatcgaagatgctggccctgcacagaa 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acaggttgtttcggagcatcctttgaatattgtcatcgaagatgctggccctgcacagaa 60
Query: 783 tcctgctactaagtgggctgtagaaggcaccgggatcctgcttgctacggggctgctcac 842
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcctgctaccaagtgggctgtagaaggcaccgggatcctgcttgctacggggctgctcac 120
Query: 843 tatcacccttgcatggcttatagctcctcgtgttggaaagaaaactgcaagaggtggtct 902
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tatcacccttgcctggcttatagctcctcgtgttggaaagaaaactgcaagaggtggtct 180
Query: 903 tcatatcctacttggaggtgtttgtgctttaacagtggtggttttcttccgcttttttgt 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcatatcctacttggaggtgtttgtgctttaacagtggtggttttcttccgcttttttgt 240
Query: 963 gctcaccagaatcaagtatggacctgcacgatattgggcaatcttgttcattttctggtt 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gctcaccagaatcaagtatggacctgcacgatattgggcaatcttgttcattttctggtt 300
Query: 1023 tcttgtctttggaatatgggcttctcggacgcacagtgccc 1063
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcttgtctttggaatatgggcttctcggacgcacagtgccc 341