Miyakogusa Predicted Gene
- Lj4g3v2775580.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2775580.2 tr|G7LC87|G7LC87_MEDTR RNA-binding protein
OS=Medicago truncatula GN=MTR_8g092550 PE=4 SV=1,87.4,0,seg,NULL; RNA
recognition motif,RNA recognition motif domain; RRM_1,RNA recognition
motif domain; RR,CUFF.51635.2
(816 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC69696 similar to UniRef100_A7PKX0 Cluster: Chromosome... 892 0.0
gnl|LJGI|TC81849 similar to UniRef100_A7PKX0 Cluster: Chromosome... 571 e-162
gnl|LJGI|TC58260 similar to UniRef100_A7P8E1 Cluster: Chromosome... 78 1e-13
>gnl|LJGI|TC69696 similar to UniRef100_A7PKX0 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (34%)
Length = 916
Score = 892 bits (450), Expect = 0.0
Identities = 453/454 (99%)
Strand = Plus / Plus
Query: 303 gcctcttgacatggagtcaggacactgcaagggttttgggtttgttcaatttgcccatct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcctcttgacatggagtcaggacactgcaagggttttgggtttgttcaatttgcccatct 60
Query: 363 tgaacatgccaaggcagctcagagtttaaatgggaagttggagattgctggcaggactat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgaacatgccaaggcagctcagagtttaaatgggaagttggagattgctggcaggactat 120
Query: 423 caaggtttcatctgtaacggatcatgttggaagccaagatgccgctgcaaaatctgcaga 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaggtttcatctgtaacggatcatgttggaagccaagatgccgctgcaaaatctgcaga 180
Query: 483 cttagacgatgatgaaggtggattgactttaaatgctcaatcaagggcgttgctgatgca 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cttagacgatgatgaaggtggattgactttaaatgctcaatcaagggcgttgctgatgca 240
Query: 543 aaggctggctggcgctgatatttcaacaagcgttggtgtgcctatggtgaatggatcagt 602
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 241 aaggctggctggcgctgatatttcaacaagcgttggtgtgcctatgatgaatggatcagt 300
Query: 603 tcctgttcagcccgcttttagcttgcctattggtaatccaggtattttacctggtcaagt 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcctgttcagcccgcttttagcttgcctattggtaatccaggtattttacctggtcaagt 360
Query: 663 attgccagcacaagtgcctaccccagtggtagaacctgtaggtacccccagcgagtgttt 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attgccagcacaagtgcctaccccagtggtagaacctgtaggtacccccagcgagtgttt 420
Query: 723 actattgaagaatatgtttgatccaagcactgag 756
||||||||||||||||||||||||||||||||||
Sbjct: 421 actattgaagaatatgtttgatccaagcactgag 454
>gnl|LJGI|TC81849 similar to UniRef100_A7PKX0 Cluster: Chromosome chr7 scaffold_20,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_20, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (44%)
Length = 1185
Score = 571 bits (288), Expect = e-162
Identities = 453/508 (89%)
Strand = Plus / Plus
Query: 35 ggtatattgaattttatgatgcgatgtcagtgccaatggcaattgctctctctggccaac 94
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||
Sbjct: 626 ggtatattgaattttatgatgcaatgtccgtcccaatggcaattgctctctctgggcaac 685
Query: 95 ttcttcttgggcaacctgtgatggtgaaaccttctgaggctgaaaagaaccttgttcaat 154
|||||||||| ||||| || ||||| |||||||||||||||||||||||||| |||||||
Sbjct: 686 ttcttcttggacaacccgtaatggtcaaaccttctgaggctgaaaagaacctagttcaat 745
Query: 155 ctaatgcttccagtggggctgctggagtagcaggaccatatggagcagtggacagaaaat 214
||| |||| | ||||| |||||||| |||||||||||||||||||| |||||| |||||
Sbjct: 746 ctactgctactagtggagctgctggtgtagcaggaccatatggagctgtggaccgaaaac 805
Query: 215 tatatgtggggaatcttcactttaacatgactgagagtcagctgcgagagatttttgagc 274
| ||||| || || |||||||| || ||||| || |||||| || |||||||||||||||
Sbjct: 806 tttatgttggaaaccttcacttcaatatgacagaaagtcagttgagagagatttttgagc 865
Query: 275 catttggtccggttgaggttgtacaattgcctcttgacatggagtcaggacactgcaagg 334
|||||||||| || |||||||||||| ||||||||||| ||||| | ||||| |||||||
Sbjct: 866 catttggtcccgtggaggttgtacaactgcctcttgacctggagactggacattgcaagg 925
Query: 335 gttttgggtttgttcaatttgcccatcttgaacatgccaaggcagctcagagtttaaatg 394
| ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 926 ggtttgggtttattcaatttgcccatcttgagcatgccaaggctgctcagagtttaaatg 985
Query: 395 ggaagttggagattgctggcaggactatcaaggtttcatctgtaacggatcatgttggaa 454
| || ||||| |||||||| || ||||| ||||||||||||||||| |||||||||||||
Sbjct: 986 gaaaattggacattgctggaagaactattaaggtttcatctgtaacagatcatgttggaa 1045
Query: 455 gccaagatgccgctgcaaaatctgcagacttagacgatgatgaaggtggattgactttaa 514
||||||| | ||||||||||||||||||| || |||||||||||||||||| ||||||
Sbjct: 1046 gccaagacacaactgcaaaatctgcagactttgatgatgatgaaggtggattggctttaa 1105
Query: 515 atgctcaatcaagggcgttgctgatgca 542
|||| |||||||| |||||||| |||||
Sbjct: 1106 atgcccaatcaagagcgttgcttatgca 1133
>gnl|LJGI|TC58260 similar to UniRef100_A7P8E1 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (59%)
Length = 1845
Score = 77.8 bits (39), Expect = 1e-13
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 16 agacgatctaaaggagttgggtatattgaattttatgatgcgatgtcagtgccaatggca 75
||||| ||||| || |||||||||||||| || |||||||| ||||| || || ||||||
Sbjct: 521 agacgttctaagggtgttgggtatattgagttctatgatgccatgtccgtacccatggca 580
Query: 76 attgctctctctggccaacttcttcttgggcaacctgtgatggtgaa 122
|| || || || ||||||| | ||||||| || ||||||||||||||
Sbjct: 581 atagcactttcaggccaacctattcttggtcatcctgtgatggtgaa 627