Miyakogusa Predicted Gene
- Lj4g3v2753030.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2753030.1 tr|G7LD86|G7LD86_MEDTR Pectin methylesterase
OS=Medicago truncatula GN=MTR_8g093460 PE=3 SV=1,78.87,0,seg,NULL;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; PME_inhib:
pectinesterase inhibitor domai,CUFF.51589.1
(1698 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC73565 similar to UniRef100_A0ZNK0 Cluster: Pectin met... 781 0.0
gnl|LJGI|TC78529 weakly similar to UniRef100_A7QB78 Cluster: Chr... 547 e-155
gnl|LJGI|BW614888 weakly similar to UniRef100_A7QB78 Cluster: Ch... 66 8e-10
gnl|LJGI|BP061602 60 5e-08
>gnl|LJGI|TC73565 similar to UniRef100_A0ZNK0 Cluster: Pectin methylesterase 2; n=1;
Pyrus communis|Rep: Pectin methylesterase 2 - Pyrus
communis (Pear), partial (18%)
Length = 531
Score = 781 bits (394), Expect = 0.0
Identities = 397/398 (99%)
Strand = Plus / Plus
Query: 1301 actgcttgatcaatggcactgaggattacatggcattgtaccacagcaacccaaaagtgc 1360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 actgcttgatcaatggcactgaggattacatggcattgtaccacagcaaccccaaagtgc 60
Query: 1361 acaagaactacttgggcaggccatggaaggagtactctaggacagtttttattcattcat 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acaagaactacttgggcaggccatggaaggagtactctaggacagtttttattcattcat 120
Query: 1421 tgttggaagctctagtcactcctcagggttggatgccatggaatggtgagtttgccctca 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgttggaagctctagtcactcctcagggttggatgccatggaatggtgagtttgccctca 180
Query: 1481 agacactttattatggggagtttgagaattctggaccaggttctgatttgtctctgaggg 1540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agacactttattatggggagtttgagaattctggaccaggttctgatttgtctctgaggg 240
Query: 1541 tttcctggagtagcaaggtccctgctgagcatgtgttgacatattcagcggagaatttca 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttcctggagtagcaaggtccctgctgagcatgtgttgacatattcagcggagaatttca 300
Query: 1601 ttcaaggtgatgattggattccatcatctcagttatcaaagcatcatcgccgcaagggtc 1660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttcaaggtgatgattggattccatcatctcagttatcaaagcatcatcgccgcaagggtc 360
Query: 1661 atcgtcatggaaccggtagaacaagacatcagtaattg 1698
||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atcgtcatggaaccggtagaacaagacatcagtaattg 398
>gnl|LJGI|TC78529 weakly similar to UniRef100_A7QB78 Cluster: Chromosome chr4
scaffold_73, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr4 scaffold_73, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (23%)
Length = 678
Score = 547 bits (276), Expect = e-155
Identities = 276/276 (100%)
Strand = Plus / Plus
Query: 251 acctcgccaccgcccaatccatggtcaagtccatcctcgactccgcctccggcagccgca 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 acctcgccaccgcccaatccatggtcaagtccatcctcgactccgcctccggcagccgca 462
Query: 311 accgctccgtcgccgccaccacctgcctcgaggtcctcgccaactcccagcaccgcattt 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 accgctccgtcgccgccaccacctgcctcgaggtcctcgccaactcccagcaccgcattt 522
Query: 371 ccctcgccaacgactccctacctcacggcaagaacaaagacgcccgagcctggctgagcg 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ccctcgccaacgactccctacctcacggcaagaacaaagacgcccgagcctggctgagcg 582
Query: 431 ccgccctcgcctaccaatacgactgccggaacggcctcagctacgccaacgactcccgct 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ccgccctcgcctaccaatacgactgccggaacggcctcagctacgccaacgactcccgct 642
Query: 491 ccgtcggggaagccatgtcattcatcgactccgtct 526
||||||||||||||||||||||||||||||||||||
Sbjct: 643 ccgtcggggaagccatgtcattcatcgactccgtct 678
Score = 131 bits (66), Expect = 2e-29
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 109 gacgccaccgccgcgccagaaatccagcaagcctgcaaggccacccgcttcccccagcaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacgccaccgccgcgccagaaatccagcaagcctgcaaggccacccgcttcccccagcaa 320
Query: 169 tgcgaa 174
||||||
Sbjct: 321 tgcgaa 326
>gnl|LJGI|BW614888 weakly similar to UniRef100_A7QB78 Cluster: Chromosome chr4
scaffold_73, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr4 scaffold_73, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (18%)
Length = 485
Score = 65.9 bits (33), Expect = 8e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 127 gaaatccagcaagcctgcaaggccacccgcttcccccagcaatgc 171
|||||||| |||||||||||||||||||||||||| || ||||||
Sbjct: 153 gaaatccaacaagcctgcaaggccacccgcttccctcaccaatgc 197
>gnl|LJGI|BP061602
Length = 268
Score = 60.0 bits (30), Expect = 5e-08
Identities = 58/62 (93%), Gaps = 4/62 (6%)
Strand = Plus / Minus
Query: 1641 gcatcatcgccgc-aagggtcat-cgtc-atggaac-cggtagaacaagacatcagtaat 1696
||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||
Sbjct: 191 gcatcatcgccgccaagggtcatgcgtcnatggaacncggtagaacaagacatcagtaat 132
Query: 1697 tg 1698
||
Sbjct: 131 tg 130