Miyakogusa Predicted Gene
- Lj4g3v2742990.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2742990.1 Non Chatacterized Hit- tr|J3LLE2|J3LLE2_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G1,35.46,4e-18,seg,NULL; zf-CCCH,Zinc finger, CCCH-type; no
description,NULL; zinc finger,Zinc finger, CCCH-type;
Z,NODE_12332_length_2268_cov_48.412697.path2.1
(1992 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC67886 weakly similar to UniRef100_A7NSJ8 Cluster: Chr... 1118 0.0
gnl|LJGI|TC74168 similar to UniRef100_Q9LIH5 Cluster: Genomic DN... 488 e-137
gnl|LJGI|BP065799 226 4e-58
gnl|LJGI|TC82034 weakly similar to UniRef100_Q9LIH5 Cluster: Gen... 204 2e-51
gnl|LJGI|GO038408 weakly similar to UniRef100_Q9LIH5 Cluster: Ge... 92 2e-17
>gnl|LJGI|TC67886 weakly similar to UniRef100_A7NSJ8 Cluster: Chromosome chr18
scaffold_1, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_1, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (16%)
Length = 851
Score = 1118 bits (564), Expect = 0.0
Identities = 576/580 (99%)
Strand = Plus / Plus
Query: 1413 taatccaagtgggttcagcccaatgatttctcctagtaaaattattccaaaagaatcagt 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taatccaagtgggttcagcccaatgatttctcctagtaaaattattccaaaagaatcagt 60
Query: 1473 agaaatgccatcactgttatctaactctgaacaatttgatgattcttgtaagactgcctt 1532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agaaatgccatcactgttatctaactctgaacaatttgatgattcttgtaagactgcctt 120
Query: 1533 ttcagaagaacaacttgtcaagagtaaacatttaattcagttgcagaaagatgaaaacat 1592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcagaagaacaacttgtcaagagtaaacatttaattcagttgcagaaagatgaaaacat 180
Query: 1593 tggggataataaggagagtaatgaaatggtagctgaagaaaagcgaagttctcgaggtga 1652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tggggataataaggagagtaatgaaatggtagctgaagaaaagcgaagttctcgaggtga 240
Query: 1653 gaataaaattacaaaagagagtggtcctttggaaagcatggaccaaagtggtgggcctga 1712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaataaaattacaaaagagagtggtcctttggaaagcatggaccaaagtggtgggcctga 300
Query: 1713 tgagatcaagaaaacaaaggatgtgaaggggatgcgtgcatttaaaggttcattggtgga 1772
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgagatcaagaacaccaaggatgtgaaggggatgcgtgcatttaaaggttcattggtgga 360
Query: 1773 gttcattaaggagcttctaaaaccaacatggaaagaaggccaaatcaccaaagacgatta 1832
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 361 gttcattaaggagcttctaaaacccacatggaaagaaggccaaatcaccaaagacgatta 420
Query: 1833 taaagaaatagtgaagaaagttactgataaagtatctgttacagtgcagcgggcacatgt 1892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taaagaaatagtgaagaaagttactgataaagtatctgttacagtgcagcgggcacatgt 480
Query: 1893 tcctcaaacacaagagaaaattgaccgctatttatcagtttcgaaaccaaagcttaacaa 1952
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 481 tcctcaaacacaagagaaaattgaccgctatttatcagtttcgaaacccaagcttaacaa 540
Query: 1953 acttatacaggcatatgtggaaaaggttcagaaggcgtag 1992
||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 acttatacaggcatatgtggaaaaggttcagaaggcgtag 580
>gnl|LJGI|TC74168 similar to UniRef100_Q9LIH5 Cluster: Genomic DNA, chromosome 3, TAC
clone:K24M9; n=2; Arabidopsis thaliana|Rep: Genomic DNA,
chromosome 3, TAC clone:K24M9 - Arabidopsis thaliana
(Mouse-ear cress), partial (12%)
Length = 511
Score = 488 bits (246), Expect = e-137
Identities = 253/254 (99%), Gaps = 1/254 (0%)
Strand = Plus / Plus
Query: 1711 gatgagatcaagaaaacaaaggatgtgaaggggatgcgtgcatttaaaggttcattggtg 1770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgagatcaagaaaacaaaggatgtgaaggggatgcgtgcatttaaaggttcattggtg 60
Query: 1771 gagttcattaaggagcttctaaaaccaacatggaaagaaggccaaatc-accaaagacga 1829
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 61 gagttcattaaggagcttctaaaaccaacatggaaagaaggccaaatccaccaaagacga 120
Query: 1830 ttataaagaaatagtgaagaaagttactgataaagtatctgttacagtgcagcgggcaca 1889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttataaagaaatagtgaagaaagttactgataaagtatctgttacagtgcagcgggcaca 180
Query: 1890 tgttcctcaaacacaagagaaaattgaccgctatttatcagtttcgaaaccaaagcttaa 1949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgttcctcaaacacaagagaaaattgaccgctatttatcagtttcgaaaccaaagcttaa 240
Query: 1950 caaacttatacagg 1963
||||||||||||||
Sbjct: 241 caaacttatacagg 254
>gnl|LJGI|BP065799
Length = 467
Score = 226 bits (114), Expect = 4e-58
Identities = 129/134 (96%)
Strand = Plus / Minus
Query: 1830 ttataaagaaatagtgaagaaagttactgataaagtatctgttacagtgcagcgggcaca 1889
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 467 ttataaagaaatagtgaagaaagttactgataaagtatctgttaccgtgcagcgggcaca 408
Query: 1890 tgttcctcaaacacaagagaaaattgaccgctatttatcagtttcgaaaccaaagcttaa 1949
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 407 tgttcctccaacaccagagaaaattgaccgctatttatcagtttcgaaacccaagcttaa 348
Query: 1950 caaacttatacagg 1963
| ||||||||||||
Sbjct: 347 ccaacttatacagg 334
Score = 60.0 bits (30), Expect = 6e-08
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1963 gcatatgtggaaaaggttcagaaggcgtag 1992
||||||||||||||||||||||||||||||
Sbjct: 158 gcatatgtggaaaaggttcagaaggcgtag 129
>gnl|LJGI|TC82034 weakly similar to UniRef100_Q9LIH5 Cluster: Genomic DNA, chromosome
3, TAC clone:K24M9; n=2; Arabidopsis thaliana|Rep:
Genomic DNA, chromosome 3, TAC clone:K24M9 - Arabidopsis
thaliana (Mouse-ear cress), partial (13%)
Length = 700
Score = 204 bits (103), Expect = 2e-51
Identities = 262/315 (83%)
Strand = Plus / Plus
Query: 1674 tggtcctttggaaagcatggaccaaagtggtgggcctgatgagatcaagaaaacaaagga 1733
|||||||||||| | |||||||||| |||||| ||||||||| |||||||||||||||
Sbjct: 52 tggtcctttggacaacatggaccaacctggtggacctgatgaggccaagaaaacaaagga 111
Query: 1734 tgtgaaggggatgcgtgcatttaaaggttcattggtggagttcattaaggagcttctaaa 1793
|||||||| | | ||||| |||||| |||||||| || || | ||||||||||| ||
Sbjct: 112 tgtgaaggagcttcgtgcctttaaattttcattggccgacttggtcaaggagcttctgaa 171
Query: 1794 accaacatggaaagaaggccaaatcaccaaagacgattataaagaaatagtgaagaaagt 1853
||| ||||||||||||| ||| ||| ||||| |||| |||| ||| |||||||||||
Sbjct: 172 gccagcatggaaagaaggtcaagtcaataaagaagattttaaaacaattgtgaagaaagt 231
Query: 1854 tactgataaagtatctgttacagtgcagcgggcacatgttcctcaaacacaagagaaaat 1913
| ||| |||||||||| ||| ||||| || | || ||||||| ||| ||||||||||
Sbjct: 232 tgttgaaaaagtatctggtactatgcaggggtcccaaattcctcagacaaaagagaaaat 291
Query: 1914 tgaccgctatttatcagtttcgaaaccaaagcttaacaaacttatacaggcatatgtgga 1973
||| | ||||| |||||||| | | ||||||||| ||||||| ||||||||||||||||
Sbjct: 292 tgatcaatatttgtcagtttcaagaacaaagcttaccaaacttgtacaggcatatgtgga 351
Query: 1974 aaaggttcagaaggc 1988
|||||||||||||||
Sbjct: 352 aaaggttcagaaggc 366
>gnl|LJGI|GO038408 weakly similar to UniRef100_Q9LIH5 Cluster: Genomic DNA, chromosome
3, TAC clone:K24M9; n=2; Arabidopsis thaliana|Rep:
Genomic DNA, chromosome 3, TAC clone:K24M9 - Arabidopsis
thaliana (Mouse-ear cress), partial (5%)
Length = 893
Score = 91.7 bits (46), Expect = 2e-17
Identities = 271/346 (78%)
Strand = Plus / Minus
Query: 20 cacaaccatgtagagattttgctgctgggaaatgcattagaggtagtcaatgtcatttcc 79
|||||||||| |||||||||||| |||| | ||| | |||||||| | || |||| |
Sbjct: 364 cacaaccatgcagagattttgcttctggcacatgtagaagaggtagcctttgcaattttc 305
Query: 80 ttcaccatgataatcaaaattatgagaacggcagggaaagtagacaaaggcaagatagag 139
| || ||||||||||||||| ||| ||| | ||||||||| || || ||||| |||
Sbjct: 304 tccatcatgataatcaaaatcctgaaaacagttgggaaagtaagcacagagaagatggag 245
Query: 140 ctcccgggtattcagctccccatgagagtggggacatttcccttacaagtggaagatctg 199
|||| | ||||| | | |||| |||||| ||||| ||| ||| ||||| ||| ||
Sbjct: 244 ctcctagatattctgatacccacgagagtagggaccattcttttaggagtggtagagcta 185
Query: 200 atgaagcttgtattaactttgcaaaaggaaggtgtagattcggagcatcatgcaggcatg 259
|||||||||||||||| ||||| ||||| ||||||||| ||| ||||||||| | ||
Sbjct: 184 atgaagcttgtattaattttgcgaaaggcaggtgtagacagggatcatcatgcaagtttg 125
Query: 260 tgcatcatggcaattctgatgaattcggcaaagtttctgtgggtgaatcaagtagggaaa 319
|||||||| ||||||||||| | ||| |||||||||| || ||||| || ||| ||||
Sbjct: 124 tgcatcataacaattctgatgggtacggtaaagtttctggggatgaattaactagagaaa 65
Query: 320 atgacattgataacaggcgcttagagaattctttcaagcagggtgg 365
| || ||||||| |||||| ||| | |||||| ||||||||||
Sbjct: 64 aggaaattgatagaaggcgcagagatagttcttttgagcagggtgg 19