Miyakogusa Predicted Gene

Lj4g3v2717140.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v2717140.1 Non Chatacterized Hit- tr|C6SVN2|C6SVN2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.15937
PE,53.33,3e-19,RRM,RNA recognition motif domain; RNA recognition
motif,RNA recognition motif domain; RNA-binding do,CUFF.51559.1
         (429 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC60956 similar to UniRef100_A7PNK3 Cluster: Chromosome...   842   0.0  
gnl|LJGI|BP084435                                                     139   2e-32
gnl|LJGI|TC81403 similar to UniRef100_A7PSR5 Cluster: Chromosome...    56   2e-07
gnl|LJGI|TC66826 similar to UniRef100_A7PSR5 Cluster: Chromosome...    56   2e-07

>gnl|LJGI|TC60956 similar to UniRef100_A7PNK3 Cluster: Chromosome chr8 scaffold_23,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr8 scaffold_23, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (65%)
          Length = 721

 Score =  842 bits (425), Expect = 0.0
 Identities = 428/429 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcaatgagggcagcagtggcggcaccgcgcggcttacggcggcttttctgcacgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  atggcaatgagggcagcagtggcggcaccgcgcggcttacggcggcttttctgcacgaac 136

                                                                       
Query: 61  tcgacctctccttcttcccctttcactctaacaggccctccaaccacccgacagatgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tcgacctctccttcttcccctttcactctaacaggccctccaaccacccgacagatgggt 196

                                                                       
Query: 121 gagcccagcaccaacctcttcgtgtccgggctcaacaagcgtacaacaacagaaaagtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gagcccagcaccaacctcttcgtgtccgggctcaacaagcgtacaacaacagaaaagtta 256

                                                                       
Query: 181 cgggaagaatttgcaaaatttggtgaagttgttcatgcaagggtggtaactgatcgagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cgggaagaatttgcaaaatttggtgaagttgttcatgcaagggtggtaactgatcgagtc 316

                                                                       
Query: 241 tcaggttactccaagggttttggttttgtgaaatatgcaactattgaagaggccagtaag 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcaggttactccaagggtttcggttttgtgaaatatgcaactattgaagaggccagtaag 376

                                                                       
Query: 301 ggcattcaaggcatggatggcaagtttttggatggatgggttatatttgcagagtatgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggcattcaaggcatggatggcaagtttttggatggatgggttatatttgcagagtatgca 436

                                                                       
Query: 361 aaatcaagtccagcacctggacaacaacctgcaaacaatatgacaaatccttatgcacgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaatcaagtccagcacctggacaacaacctgcaaacaatatgacaaatccttatgcacgg 496

                    
Query: 421 cagtagttc 429
           |||||||||
Sbjct: 497 cagtagttc 505


>gnl|LJGI|BP084435 
          Length = 451

 Score =  139 bits (70), Expect = 2e-32
 Identities = 70/70 (100%)
 Strand = Plus / Minus

                                                                       
Query: 255 gggttttggttttgtgaaatatgcaactattgaagaggccagtaagggcattcaaggcat 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gggttttggttttgtgaaatatgcaactattgaagaggccagtaagggcattcaaggcat 392

                     
Query: 315 ggatggcaag 324
           ||||||||||
Sbjct: 391 ggatggcaag 382


>gnl|LJGI|TC81403 similar to UniRef100_A7PSR5 Cluster: Chromosome chr8 scaffold_29,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr8 scaffold_29, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (66%)
          Length = 727

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 322 aagtttttggatggatgggttatatttg 349
           ||||||||||||||||||||||||||||
Sbjct: 452 aagtttttggatggatgggttatatttg 479


>gnl|LJGI|TC66826 similar to UniRef100_A7PSR5 Cluster: Chromosome chr8 scaffold_29,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr8 scaffold_29, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (66%)
          Length = 621

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 322 aagtttttggatggatgggttatatttg 349
           ||||||||||||||||||||||||||||
Sbjct: 288 aagtttttggatggatgggttatatttg 315