Miyakogusa Predicted Gene

Lj4g3v2717080.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v2717080.1 Non Chatacterized Hit- tr|I1IA16|I1IA16_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,32.97,3e-18,RNA-binding domain, RBD,NULL; seg,NULL; RNA
recognition motif,RNA recognition motif domain; SUBFAMIL,CUFF.51545.1
         (1770 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC71738 similar to UniRef100_A9XIW7 Cluster: Terminal e...   892   0.0  
gnl|LJGI|FS357915 similar to UniRef100_A9XIW6 Cluster: Terminal ...   543   e-153

>gnl|LJGI|TC71738 similar to UniRef100_A9XIW7 Cluster: Terminal ear1-like 2 protein;
           n=1; Populus tremula x Populus alba|Rep: Terminal
           ear1-like 2 protein - Populus tremula x Populus alba,
           partial (9%)
          Length = 581

 Score =  892 bits (450), Expect = 0.0
 Identities = 496/519 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggaaacttagaccccacggcggaggagttcaagccgagaagaaaccctaaccactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  atgggaaacttagaccccacggcggaggagttcaagccgagaagaaaccctaaccactta 122

                                                                       
Query: 61  cccttannnnnnnnnnnnnnnnnnnnnnnaacgacaccgtttccgtatccatactcctat 120
           ||||||                       |||||||||||||||||||||||||||||||
Sbjct: 123 cccttacccccacccccacccccacccccaacgacaccgtttccgtatccatactcctat 182

                                                                       
Query: 121 tatccattcgctgtttccacctactcttacgccggaggatacgaaccgctgccgtacccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tatccattcgctgtttccacctactcttacgccggaggatacgaaccgctgccgtacccg 242

                                                                       
Query: 181 ccgttttgttacggcgagcctcttccgtacccgccgccggcacacattccctctacgccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ccgttttgttacggcgagcctcttccgtacccgccgccggcacacattccctctacgccg 302

                                                                       
Query: 241 cagccgccgctgttaccgacgcggtcgttgctgctgagtttctttccgccggaggctgcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cagccgccgctgttaccgacgcggtcgttgctgctgagtttctttccgccggaggctgcg 362

                                                                       
Query: 301 gcggcggttacagagtcgtcggtgaggaggcagctggagattttcggcgacgtgagaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gcggcggttacagagtcgtcggtgaggaggcagctggagattttcggcgacgtgagaggg 422

                                                                       
Query: 361 gttcagatggagaggcgctgcgaggggacggttatcgttcacttttatgacctcagacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gttcagatggagaggcgctgcgaggggacggttatcgttcacttttatgacctcagacat 482

                                                                       
Query: 421 gcggagacggcgttggcggcgattcggttgcagcagcagacgaagctgcttaacccgccg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gcggagacggcgttggcggcgattcggttgcagcagcagacgaagctgcttaacccgccg 542

                                                  
Query: 481 gcgcgtggggttgcttatggttgtgatgtttgggcgcag 519
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gcgcgtggggttgcttatggttgtgatgtttgggcgcag 581


>gnl|LJGI|FS357915 similar to UniRef100_A9XIW6 Cluster: Terminal ear1-like 1 protein;
            n=1; Populus tremula x Populus alba|Rep: Terminal
            ear1-like 1 protein - Populus tremula x Populus alba,
            partial (7%)
          Length = 666

 Score =  543 bits (274), Expect = e-153
 Identities = 274/274 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1497 agttcagggattggaagcgttgaaagagcatttcaagaactccaagttcccatacgagat 1556
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666  agttcagggattggaagcgttgaaagagcatttcaagaactccaagttcccatacgagat 607

                                                                        
Query: 1557 agagcactacctgccagtgtatttttcacctcctcgagacgggaagcaagtgacagagcc 1616
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606  agagcactacctgccagtgtatttttcacctcctcgagacgggaagcaagtgacagagcc 547

                                                                        
Query: 1617 acttccaattggtcaaagtaacaagcactcacgaagcttttccattggttcgcatagcca 1676
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546  acttccaattggtcaaagtaacaagcactcacgaagcttttccattggttcgcatagcca 487

                                                                        
Query: 1677 tatggtagggacttcttctgaggacttgattaaccaccaaaacggcagcgttgaaggtga 1736
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486  tatggtagggacttcttctgaggacttgattaaccaccaaaacggcagcgttgaaggtga 427

                                              
Query: 1737 tgatgaggataatggatgtggattgagttgagtg 1770
            ||||||||||||||||||||||||||||||||||
Sbjct: 426  tgatgaggataatggatgtggattgagttgagtg 393