Miyakogusa Predicted Gene

Lj4g3v2630940.4
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v2630940.4 Non Chatacterized Hit- tr|B7FND1|B7FND1_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,81.28,0,ATP-DEPENDENT PROTEASE (CEREBLON),NULL; seg,NULL;
TauE,Transmembrane protein TauE like,CUFF.51408.4
         (1413 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC67669 similar to UniRef100_A7P5B8 Cluster: Chromosome...    66   6e-10
gnl|LJGI|DC593975 similar to UniRef100_Q6EQH5 Cluster: Membrane ...    54   2e-06
gnl|LJGI|GO011633 similar to UniRef100_Q6EQH5 Cluster: Membrane ...    54   2e-06

>gnl|LJGI|TC67669 similar to UniRef100_A7P5B8 Cluster: Chromosome chr4 scaffold_6,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr4 scaffold_6, whole genome shotgun sequence
            - Vitis vinifera (Grape), partial (28%)
          Length = 620

 Score = 65.9 bits (33), Expect = 6e-10
 Identities = 93/113 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1072 ggaattcctcctcaggtggcaagtgctacttccacttttgcaatgacattttctgcatct 1131
            |||||| | |||||||| |||||||| ||  ||||||||| ||||||||| || ||||||
Sbjct: 124  ggaattgcacctcaggttgcaagtgccacagccacttttggaatgacattctcagcatct 183

                                                                 
Query: 1132 atgtcagtggtggaatattaccttctcaaacgttttcctattccttatgctct 1184
            || || || ||  |||||||||| || || || |||||| | |||||||||||
Sbjct: 184  atatctgttgtacaatattacctcctaaatcgatttcctgtgccttatgctct 236


>gnl|LJGI|DC593975 similar to UniRef100_Q6EQH5 Cluster: Membrane protein-like; n=1;
           Oryza sativa Japonica Group|Rep: Membrane protein-like -
           Oryza sativa subsp. japonica (Rice), partial (32%)
          Length = 589

 Score = 54.0 bits (27), Expect = 2e-06
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 556 gcattcttaaagggtgttgatacatggaaaaaagaaacc 594
           |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 228 gcattcttcaagggtgttgagacatggaaaaaggaaacc 266


>gnl|LJGI|GO011633 similar to UniRef100_Q6EQH5 Cluster: Membrane protein-like; n=1;
           Oryza sativa Japonica Group|Rep: Membrane protein-like -
           Oryza sativa subsp. japonica (Rice), partial (30%)
          Length = 664

 Score = 54.0 bits (27), Expect = 2e-06
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 556 gcattcttaaagggtgttgatacatggaaaaaagaaacc 594
           |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 284 gcattcttcaagggtgttgagacatggaaaaaggaaacc 322