Miyakogusa Predicted Gene
- Lj4g3v2605910.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2605910.2 CUFF.51510.2
(1587 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC77476 similar to UniRef100_A7QDH4 Cluster: Chromosome... 228 8e-59
gnl|LJGI|BU494216 homologue to UniRef100_Q6DUJ2 Cluster: CesA2; ... 119 6e-26
gnl|LJGI|TC72916 homologue to UniRef100_Q6DUJ2 Cluster: CesA2; n... 113 3e-24
gnl|LJGI|TC66434 similar to UniRef100_Q6DUJ2 Cluster: CesA2; n=1... 92 1e-17
gnl|LJGI|TC81605 similar to UniRef100_Q2IB41 Cluster: Cellulose ... 66 7e-10
gnl|LJGI|FS345328 homologue to UniRef100_Q6J8X2 Cluster: Cellulo... 62 1e-08
gnl|LJGI|DC598741 homologue to UniRef100_A7PBB7 Cluster: Chromos... 58 2e-07
gnl|LJGI|TC82583 similar to UniRef100_A7PFP0 Cluster: Chromosome... 58 2e-07
>gnl|LJGI|TC77476 similar to UniRef100_A7QDH4 Cluster: Chromosome chr10 scaffold_81,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_81, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (23%)
Length = 883
Score = 228 bits (115), Expect = 8e-59
Identities = 246/289 (85%), Gaps = 3/289 (1%)
Strand = Plus / Plus
Query: 181 gcacctaaggctgaaaatgagtcctcagctccaccagagcagcagatggaaggaatacag 240
||||||||||||||||||||| || ||||||||| ||||||||||||| ||| |||
Sbjct: 513 gcacctaaggctgaaaatgagatgccaattccaccagaacagcagatggaagaaatgcag 572
Query: 241 cccacagaagctgcttc---tctaccactttcagtacttattccattatcgaaaagcaaa 297
||||||| |||||| | | ||||||||||| |||||||| | || |||| |||
Sbjct: 573 tccacagaggctgctgcagctgagccactttcagtcattattccaatctcaaaaactaaa 632
Query: 298 gtggcaccctacagaactgtgatcatcatgcgactaataatcttggctcttttcattcat 357
| |||| |||||| ||| || ||||||||||| |||||||||| ||| ||| | |||
Sbjct: 633 ctctcaccatacagatttgttataatcatgcgactgataatcttgggtctcttcttccat 692
Query: 358 tatcgagttacaaatcctgttgatagcgcttttggtctttggttgacatctatcatctgt 417
||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 693 tatcgagttactcatcctgttgatagtgcttttggtctctggttgacatctatcatctgt 752
Query: 418 gagatctggtttgcattttcatgggtgttagatcagttccctaaatggt 466
|||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 753 gagatctggtttgcatttgcatgggtgttagatcagttccctaaatggt 801
>gnl|LJGI|BU494216 homologue to UniRef100_Q6DUJ2 Cluster: CesA2; n=1; Acacia
mangium|Rep: CesA2 - Acacia mangium, partial (13%)
Length = 419
Score = 119 bits (60), Expect = 6e-26
Identities = 192/236 (81%)
Strand = Plus / Plus
Query: 1162 aatcttgattgtgatcattacgttaacaacagcaaggccgttcgggaagcaatgtgtttt 1221
||||||||||||||||| ||| | ||||||||||||||| | | ||||||||||| |||
Sbjct: 31 aatcttgattgtgatcactacataaacaacagcaaggccttgagagaagcaatgtgcttt 90
Query: 1222 ctcatggatccagaagttggtagagacgtgtgttatgtacaattccctcaaagatttgac 1281
| |||||||| | |||||| | | || || ||||| || || || || || |||||
Sbjct: 91 atgatggatcctaaccttggtaaaaatgtttgctatgtccagtttccgcagaggtttgat 150
Query: 1282 ggtattgatcgtagtgatcgatatgccaatcgcaatacagttttctttgatgttaacatg 1341
||||||||| | | |||||||||||||||||| ||||| |||||||||||| | ||| ||
Sbjct: 151 ggtattgataggaatgatcgatatgccaatcgtaatactgttttctttgatataaacttg 210
Query: 1342 aaaggacttgatggcattcaaggaccagtatatgtggggactggatgtgttttcaa 1397
| ||| | |||||||||||||| || || |||||||| ||||| ||||| |||||
Sbjct: 211 agaggtttggatggcattcaaggtcctgtttatgtgggtactgggtgtgtcttcaa 266
>gnl|LJGI|TC72916 homologue to UniRef100_Q6DUJ2 Cluster: CesA2; n=1; Acacia
mangium|Rep: CesA2 - Acacia mangium, partial (22%)
Length = 697
Score = 113 bits (57), Expect = 3e-24
Identities = 189/233 (81%)
Strand = Plus / Plus
Query: 1165 cttgattgtgatcattacgttaacaacagcaaggccgttcgggaagcaatgtgttttctc 1224
|||||||||||||| ||| | ||||||||||||||| | | ||||||||||| ||| |
Sbjct: 2 cttgattgtgatcactacataaacaacagcaaggccttgagagaagcaatgtgctttatg 61
Query: 1225 atggatccagaagttggtagagacgtgtgttatgtacaattccctcaaagatttgacggt 1284
|||||||| | |||||| | | || || ||||| || || || || || ||||| |||
Sbjct: 62 atggatcctaaccttggtaaaaatgtttgctatgtccagtttccgcagaggtttgatggt 121
Query: 1285 attgatcgtagtgatcgatatgccaatcgcaatacagttttctttgatgttaacatgaaa 1344
|||||| | | |||||||||||||||||| ||||| |||||||||||| | ||| ||| |
Sbjct: 122 attgataggaatgatcgatatgccaatcgtaatactgttttctttgatataaacttgaga 181
Query: 1345 ggacttgatggcattcaaggaccagtatatgtggggactggatgtgttttcaa 1397
|| | |||||||||||||| || || |||||||| ||||| ||||| |||||
Sbjct: 182 ggtttggatggcattcaaggtcctgtttatgtgggtactgggtgtgtcttcaa 234
>gnl|LJGI|TC66434 similar to UniRef100_Q6DUJ2 Cluster: CesA2; n=1; Acacia mangium|Rep:
CesA2 - Acacia mangium, partial (71%)
Length = 2954
Score = 91.7 bits (46), Expect = 1e-17
Identities = 211/266 (79%)
Strand = Plus / Plus
Query: 604 aatacagtgctttctatccttgccgttgactacccggttgaaaaagtatcttgctatgcg 663
||||| ||||| ||||| ||||| ||||||||||| || || || || || || ||||
Sbjct: 1431 aatactgtgctatctattcttgctgttgactacccagtagataaggtctcctgttatgtc 1490
Query: 664 tcagacgatggtgctgcaatgctcacatttgagtctcttgtggagacagctgaatttgca 723
|| || ||||||||||| ||| | |||||||| |||| | |||||| | |||||| ||
Sbjct: 1491 tctgatgatggtgctgctatgttgacatttgaagctctggctgagacatcagaattttca 1550
Query: 724 aagaagtgggtgccattctgcaaaaagttttcaattgaaccaagagcacctgagtattac 783
| ||| ||||| || |||||||| || | |||||||||||| |||||||||||| ||
Sbjct: 1551 aggaaatgggttcctttctgcaagaaatattcaattgaaccccgagcacctgagttctat 1610
Query: 784 ttctcacaaaagattgactacctcaaggacaaagtgcaaccttcttttgtgaaggaacgc 843
|| ||| | |||||||||||| | || || || || ||||| || ||||| || || ||
Sbjct: 1611 ttttcaaagaagattgactacttgaaagataaggttcaaccatcatttgtcaaagatcgt 1670
Query: 844 agagcgatgaagagagactatgaaga 869
||||| ||||||||||| ||||||||
Sbjct: 1671 agagcaatgaagagagaatatgaaga 1696
Score = 79.8 bits (40), Expect = 5e-14
Identities = 190/240 (79%)
Strand = Plus / Plus
Query: 1162 aatcttgattgtgatcattacgttaacaacagcaaggccgttcgggaagcaatgtgtttt 1221
|||||||||||||||||||| | ||||||||||| ||| | | ||||| ||||| |||
Sbjct: 1989 aatcttgattgtgatcattatataaacaacagcaaagccttgagagaagctatgtgcttt 2048
Query: 1222 ctcatggatccagaagttggtagagacgtgtgttatgtacaattccctcaaagatttgac 1281
| |||||||| | |||| | | | || || ||||| || || || || || ||||||
Sbjct: 2049 atgatggatcccaaccttgggaaaaatgtttgctatgtccagtttccacagaggtttgac 2108
Query: 1282 ggtattgatcgtagtgatcgatatgccaatcgcaatacagttttctttgatgttaacatg 1341
||||||||| | ||||||||||||||| || ||||| |||||||||||| | ||| ||
Sbjct: 2109 ggtattgataagaatgatcgatatgccaaccgtaatactgttttctttgatataaacttg 2168
Query: 1342 aaaggacttgatggcattcaaggaccagtatatgtggggactggatgtgttttcaataga 1401
| ||| ||||| |||||||| || || |||||||| ||||||||||| || ||||||
Sbjct: 2169 agaggttcggatggaattcaaggccctgtttatgtgggcactggatgtgtctttaataga 2228
>gnl|LJGI|TC81605 similar to UniRef100_Q2IB41 Cluster: Cellulose synthase 3; n=1;
Eucalyptus grandis|Rep: Cellulose synthase 3 - Eucalyptus
grandis (Flooded gum), partial (39%)
Length = 1281
Score = 65.9 bits (33), Expect = 7e-10
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 1318 acagttttctttgatgttaacatgaaaggacttgatggcattcaaggaccagtatatgtg 1377
||||||||||||||| |||||||||| || || ||||| |||||||| || ||||||||
Sbjct: 162 acagttttctttgatattaacatgaagggtctagatggtattcaaggtcctgtatatgtc 221
Query: 1378 gggactggatgtgtttt 1394
|| || || ||||||||
Sbjct: 222 ggcacagggtgtgtttt 238
>gnl|LJGI|FS345328 homologue to UniRef100_Q6J8X2 Cluster: Cellulose synthase; n=1;
Populus tremula x Populus tremuloides|Rep: Cellulose
synthase - Populus tremula x Populus tremuloides,
partial (22%)
Length = 704
Score = 61.9 bits (31), Expect = 1e-08
Identities = 111/135 (82%), Gaps = 2/135 (1%)
Strand = Plus / Minus
Query: 763 ccaagagcacctgagtattacttctcacaaaagattgactacctcaaggacaaagtgcaa 822
||||| || |||||||| |||||||| | || ||||| ||| | ||||| || |||||
Sbjct: 461 ccaagggctcctgagtactacttctctgagaaaattgattacttgaaggataaggtgcag 402
Query: 823 ccttcttttgtgaaggaacgcagagcgatgaagagagactatgaagagtataaggt-aag 881
||| | |||||||||||| | || || ||||||||||| |||||||| | |||||| |||
Sbjct: 401 cctacatttgtgaaggaaagaagggctatgaagagagaatatgaagaatttaaggtgaag 342
Query: 882 agttaatgctttggt 896
| |||||||||||||
Sbjct: 341 a-ttaatgctttggt 328
>gnl|LJGI|DC598741 homologue to UniRef100_A7PBB7 Cluster: Chromosome chr16 scaffold_10,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr16 scaffold_10, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (4%)
Length = 139
Score = 58.0 bits (29), Expect = 2e-07
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 1296 tgatcgatatgccaatcgcaatacagttttctttgatgttaacatgaaaggacttgatgg 1355
|||| ||||||| |||| ||| || || ||||||||||| ||||||| || ||||||||
Sbjct: 25 tgatagatatgctaatcacaacactgtcttctttgatgtaaacatgagagcccttgatgg 84
Query: 1356 cattcaaggaccagtatatgtggggactggatgtgttttca 1396
||||||| ||||| ||||| || ||||| ||| ||||||
Sbjct: 85 tcttcaagggccagtgtatgtaggaactggttgtcttttca 125
>gnl|LJGI|TC82583 similar to UniRef100_A7PFP0 Cluster: Chromosome chr11 scaffold_14,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr11 scaffold_14, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (31%)
Length = 969
Score = 58.0 bits (29), Expect = 2e-07
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 406 tctatcatctgtgagatctggtttgcattttcatgggtgttagatcagttccctaaatgg 465
|||||||| |||||||||||||||||||| ||||| | | |||||||| || ||||||
Sbjct: 861 tctatcatttgtgagatctggtttgcattgacatggattcttgatcagtttcccaaatgg 920
Query: 466 tttcc 470
|||||
Sbjct: 921 tttcc 925