Miyakogusa Predicted Gene
- Lj4g3v2605900.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2605900.2 Non Chatacterized Hit- tr|I1KSF7|I1KSF7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13726
PE,95.7,0,seg,NULL; Cellulose_synt,Cellulose synthase; CELLULOSE
SYNTHASE-RELATED,NULL; X-BOX TRANSCRIPTION FA,CUFF.51508.2
(600 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AV416600 similar to UniRef100_P93155 Cluster: Cellulose... 668 0.0
gnl|LJGI|TC58598 homologue to UniRef100_P93155 Cluster: Cellulos... 442 e-123
gnl|LJGI|AV773960 similar to UniRef100_O81368 Cluster: Secondary... 149 2e-35
gnl|LJGI|TC59037 homologue to UniRef100_Q8H2C6 Cluster: Cellulos... 62 4e-09
gnl|LJGI|TC79938 similar to UniRef100_A7Q795 Cluster: Chromosome... 58 7e-08
>gnl|LJGI|AV416600 similar to UniRef100_P93155 Cluster: Cellulose synthase; n=3;
Gossypium|Rep: Cellulose synthase - Gossypium hirsutum
(Upland cotton) (Gossypium mexicanum), partial (13%)
Length = 378
Score = 668 bits (337), Expect = 0.0
Identities = 337/337 (100%)
Strand = Plus / Plus
Query: 264 accagtgctttccaaccttgcaagtgttctcttccttggacttttcctctccattataat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 accagtgctttccaaccttgcaagtgttctcttccttggacttttcctctccattataat 63
Query: 324 gactagtgtgcttgagcttcgctggagcggtgttagcatcgaggatttgtggcgtaacga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gactagtgtgcttgagcttcgctggagcggtgttagcatcgaggatttgtggcgtaacga 123
Query: 384 gcagttctgggtgattggaggtgtctcagcacatttgtttgcagtcttccaaggattgct 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gcagttctgggtgattggaggtgtctcagcacatttgtttgcagtcttccaaggattgct 183
Query: 444 caagatgttggctggtgttgatactaacttcaccgtcacggccaaggccgctgaggacgg 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 caagatgttggctggtgttgatactaacttcaccgtcacggccaaggccgctgaggacgg 243
Query: 504 cgagtttggtgatctttacattgtgaagtggacaactctcttgattcctccaacaaccct 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cgagtttggtgatctttacattgtgaagtggacaactctcttgattcctccaacaaccct 303
Query: 564 catcgttgttaacatggttggtgttgttgctggattc 600
|||||||||||||||||||||||||||||||||||||
Sbjct: 304 catcgttgttaacatggttggtgttgttgctggattc 340
>gnl|LJGI|TC58598 homologue to UniRef100_P93155 Cluster: Cellulose synthase; n=3;
Gossypium|Rep: Cellulose synthase - Gossypium hirsutum
(Upland cotton) (Gossypium mexicanum), partial (34%)
Length = 1252
Score = 442 bits (223), Expect = e-123
Identities = 505/599 (84%)
Strand = Plus / Plus
Query: 1 atgcctttgaggcctgcattcaaaggatcagcacctatcaacttgtccgatcggttgcac 60
||||| || ||||||||||||||||| || || || |||||| | || ||||||||||||
Sbjct: 146 atgcccttaaggcctgcattcaaagggtccgcgccaatcaacctttctgatcggttgcac 205
Query: 61 caagtccttcgatgggcgcttggatcaattgaaattttcctaagcagacattgtcccctc 120
||||| ||||||||||| || |||||| ||||||||||| | |||||||| || |||||
Sbjct: 206 caagttcttcgatgggccctcggatcagttgaaattttctttagcagacactgcccccta 265
Query: 121 tggtatggagttgctggaggccatctcaaatgtctgcagagaatggcttatataaacacc 180
|||||||| |||| || || | || | || ||||||||| ||||||| || ||||||
Sbjct: 266 tggtatggttttgcaggcggtcgcctgagctggctgcagagactggcttacatcaacacc 325
Query: 181 atagtctatcctttcacatctcttcctctgattgcttattgtacattgccagccatttgc 240
|| ||||| |||||||||||||||||||| |||| |||||| | ||||| || ||||||
Sbjct: 326 attgtctaccctttcacatctcttcctctagttgcatattgttctttgcctgcaatttgc 385
Query: 241 cttctcacaggaaaatttattataccagtgctttccaaccttgcaagtgttctcttcctt 300
||||| ||||||||||| || |||||| |||||| |||||||||||||||||||| |||
Sbjct: 386 cttcttacaggaaaattcatcataccaacgctttcaaaccttgcaagtgttctctttctt 445
Query: 301 ggacttttcctctccattataatgactagtgtgcttgagcttcgctggagcggtgttagc 360
||||||||| | ||||||||| ||||||||||||||||| || ||||||||||| | |
Sbjct: 446 ggacttttcatttccattatagccactagtgtgcttgagctgcggtggagcggtgtaacc 505
Query: 361 atcgaggatttgtggcgtaacgagcagttctgggtgattggaggtgtctcagcacatttg 420
||| | ||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |
Sbjct: 506 atccaagatttgtggcgaaacgagcagttctgggtgattggaggtgtttcagctcatctc 565
Query: 421 tttgcagtcttccaaggattgctcaagatgttggctggtgttgatactaacttcaccgtc 480
|| || |||||||||||||| || |||||||| || |||||||| || |||||||| |||
Sbjct: 566 ttcgccgtcttccaaggattcctaaagatgtttgcaggtgttgacaccaacttcacagtc 625
Query: 481 acggccaaggccgctgaggacggcgagtttggtgatctttacattgtgaagtggacaact 540
|| |||| | ||||| || | ||||||||||| || ||||| | || ||||| ||
Sbjct: 626 acttccaaatctgctgatgatgcagagtttggtgaactatacatcatcaaatggactaca 685
Query: 541 ctcttgattcctccaacaaccctcatcgttgttaacatggttggtgttgttgctggatt 599
|| ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 686 cttttgattcctccgacgacccttatcgttgttaacatggttggtgttgttgctggatt 744
>gnl|LJGI|AV773960 similar to UniRef100_O81368 Cluster: Secondary xylem cellulose
synthase; n=2; Populus|Rep: Secondary xylem cellulose
synthase - Populus tremuloides (Quaking aspen), partial
(12%)
Length = 503
Score = 149 bits (75), Expect = 2e-35
Identities = 219/267 (82%)
Strand = Plus / Plus
Query: 1 atgcctttgaggcctgcattcaaaggatcagcacctatcaacttgtccgatcggttgcac 60
||||| || ||||||||||||||||| || || || |||||| | || ||||||| ||||
Sbjct: 167 atgcccttaaggcctgcattcaaagggtccgcgccaatcaacctttctgatcggtagcac 226
Query: 61 caagtccttcgatgggcgcttggatcaattgaaattttcctaagcagacattgtcccctc 120
||||| ||||||||||| || |||||| ||||||||||| | |||||||| || |||||
Sbjct: 227 caagttcttcgatgggccctcggatcagttgaaattttctttagcagacactgcccccta 286
Query: 121 tggtatggagttgctggaggccatctcaaatgtctgcagagaatggcttatataaacacc 180
|||||||| | || || || | || | || ||||||||| ||||||| || ||||||
Sbjct: 287 tggtatggtttggcaggcggtcgcctgagctggctgcagagactggcttacatcaacacc 346
Query: 181 atagtctatcctttcacatctcttcctctgattgcttattgtacattgccagccatttgc 240
|| ||||| |||||||||||||||||||| |||| ||| || | | ||| || ||||||
Sbjct: 347 attgtctaccctttcacatctcttcctctagttgcatatggttcttggcctgcaatttgc 406
Query: 241 cttctcacaggaaaatttattatacca 267
||||| ||||||||||| || ||||||
Sbjct: 407 cttcttacaggaaaattcatcatacca 433
>gnl|LJGI|TC59037 homologue to UniRef100_Q8H2C6 Cluster: Cellulose synthase; n=1;
Populus tremuloides|Rep: Cellulose synthase - Populus
tremuloides (Quaking aspen), partial (26%)
Length = 1037
Score = 61.9 bits (31), Expect = 4e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 59 accaagtccttcgatgggcgcttggatcaattgaaattttcctaagcagacattgtcccc 118
||||||| ||||||||||| | ||||| |||||||| | ||||||||||||||||||
Sbjct: 67 accaagtacttcgatgggctttaggatctgttgaaattctactaagcagacattgtccca 126
Query: 119 tctggta 125
|||||||
Sbjct: 127 tctggta 133
>gnl|LJGI|TC79938 similar to UniRef100_A7Q795 Cluster: Chromosome chr18 scaffold_59,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_59, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (30%)
Length = 1021
Score = 58.0 bits (29), Expect = 7e-08
Identities = 92/113 (81%)
Strand = Plus / Plus
Query: 16 gcattcaaaggatcagcacctatcaacttgtccgatcggttgcaccaagtccttcgatgg 75
||||||||||| || |||||||||||| | || ||||| |||||||||| ||||| |||
Sbjct: 469 gcattcaaagggtctgcacctatcaacctttcagatcgtctgcaccaagttcttcggtgg 528
Query: 76 gcgcttggatcaattgaaattttcctaagcagacattgtcccctctggtatgg 128
|| ||||| || | || || || | |||||||||||||| ||||||||||
Sbjct: 529 gcccttgggtctgtcgagatctttttcagcagacattgtccaatctggtatgg 581