Miyakogusa Predicted Gene

Lj4g3v2603980.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v2603980.1 tr|Q94KY7|Q94KY7_BRANA Acetyl-CoA synthetase
(Fragment) OS=Brassica napus GN=MYJ24-3-BN-2 PE=4 SV=1,56.94,1e-17,no
description,NULL; Acetyl-CoA synthetase-like,NULL;
AMP-binding,AMP-dependent synthetase/ligase,CUFF.51235.1
         (684 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC72715 similar to UniRef100_A7P055 Cluster: Chromosome...   289   1e-77
gnl|LJGI|FS357825 similar to UniRef100_A7P055 Cluster: Chromosom...    80   2e-14

>gnl|LJGI|TC72715 similar to UniRef100_A7P055 Cluster: Chromosome chr6 scaffold_3,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr6 scaffold_3, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (23%)
          Length = 775

 Score =  289 bits (146), Expect = 1e-77
 Identities = 146/146 (100%)
 Strand = Plus / Plus

                                                                       
Query: 539 tatacatgggatcaactgatagattgcttaatgctgatcatgaggaggtttactttaagg 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tatacatgggatcaactgatagattgcttaatgctgatcatgaggaggtttactttaagg 60

                                                                       
Query: 599 gcatgccaatttacaaaggaaaggttcttagaagacatggagatataatcaaaagaactg 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gcatgccaatttacaaaggaaaggttcttagaagacatggagatataatcaaaagaactg 120

                                     
Query: 659 ttggaggccatttcattgtacaaggg 684
           ||||||||||||||||||||||||||
Sbjct: 121 ttggaggccatttcattgtacaaggg 146


>gnl|LJGI|FS357825 similar to UniRef100_A7P055 Cluster: Chromosome chr6 scaffold_3,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr6 scaffold_3, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (19%)
          Length = 715

 Score = 79.8 bits (40), Expect = 2e-14
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                   
Query: 629 gaagacatggagatataatcaaaagaactgttggaggccatttcattgtacaaggg 684
           |||||||||||||||||||||| ||||||||||| ||| || ||||||||||||||
Sbjct: 715 gaagacatggagatataatcaagagaactgttggcggctatatcattgtacaaggg 660