Miyakogusa Predicted Gene

Lj4g3v2577120.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj4g3v2577120.1 Non Chatacterized Hit- tr|A5XEM2|A5XEM2_MEDTR
Putative RNA binding protein OS=Medicago truncatula GN,52.54,0,ARM
repeat,Armadillo-type fold; IMPORTIN-5 (IMPORTIN SUBUNIT BETA-3),NULL;
IMPORTIN BETA,NULL; HEAT_,CUFF.51162.1
         (1485 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV410177 homologue to UniRef100_A2Q1G7 Cluster: HEAT; n...   121   1e-26

>gnl|LJGI|AV410177 homologue to UniRef100_A2Q1G7 Cluster: HEAT; n=2; Medicago
            truncatula|Rep: HEAT - Medicago truncatula (Barrel
            medic), partial (15%)
          Length = 403

 Score =  121 bits (61), Expect = 1e-26
 Identities = 163/197 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1036 accaataactatgaatatggacaggagtgtttgtataggctttccgtttactttggtggg 1095
            |||| ||| |||| || ||| |||||||||||| |||| |||||  |||  || ||||||
Sbjct: 205  accagtaattatggatttgggcaggagtgtttggatagactttcgatttctttgggtggg 264

                                                                        
Query: 1096 agcgctatagtgccaattgtttctgagctgttgccaacttatctggctgcttccgaatgg 1155
            | | | ||||||||| ||| ||| ||| |||||||  ||||  |||||||| | ||||||
Sbjct: 265  aacacgatagtgccagttgcttcggagttgttgcctgcttacttggctgctcctgaatgg 324

                                                                        
Query: 1156 aaaaagcgtcatgctgcactcattgcccttgcacagattgcagatggttgttcagatgag 1215
             |||||| |||||||||||||||||| ||||||||||||||||| ||||||||| | | |
Sbjct: 325  caaaagcatcatgctgcactcattgcacttgcacagattgcagagggttgttcaaaggtg 384

                             
Query: 1216 atgataaaaaatatgga 1232
            |||||||| ||| ||||
Sbjct: 385  atgataaagaatctgga 401