Miyakogusa Predicted Gene
- Lj4g3v2539190.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2539190.1 tr|F2CYX2|F2CYX2_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,42.28,4e-17,WD40,WD40 repeat; no description,WD40/YVTN
repeat-like-containing domain;
WD_REPEATS_REGION,WD40-rep,gene.g56951.t1.1
(765 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57859 weakly similar to UniRef100_A7P3M7 Cluster: Chr... 468 e-131
>gnl|LJGI|TC57859 weakly similar to UniRef100_A7P3M7 Cluster: Chromosome chr1
scaffold_5, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr1 scaffold_5, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (72%)
Length = 1610
Score = 468 bits (236), Expect = e-131
Identities = 397/450 (88%), Gaps = 3/450 (0%)
Strand = Plus / Plus
Query: 56 gatggtttgactgggatctaaacaagaattctgaaattcatcaattgggtctcaagtcat 115
|||||||||||||||||| |||||||||||||||||||||| | ||||||||||||| |
Sbjct: 482 gatggtttgactgggatcaaaacaagaattctgaaattcataagttgggtctcaagttgt 541
Query: 116 cagagaaagtgctaacccagttggaggatgttggactgcaattagcattggcattcaaca 175
||||||||||| | ||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 542 cagagaaagtgtttaccgagttggaggatgttggacagcaattagcattggcattcaaca 601
Query: 176 atgatggtactgcactagctgctggtggggaggatggaaagctaaaggttttcaagtggc 235
||||||||||||| |||||| |||||||||||||||| | |||| ||||||||||||||
Sbjct: 602 atgatggtactgcgctagctactggtggggaggatggcagtctaagggttttcaagtggc 661
Query: 236 ctagcatggaaattattctcaacgagcctaatgctca---ttctactgtcaaggacttgc 292
|||||||| || |||||||| | | ||| |||||| |||| |||||||||||||||
Sbjct: 662 ctagcatgaaagttattctcgaacattctactgctcattcttcttctgtcaaggacttgc 721
Query: 293 attttagctccgatggtaagtggattgtatctttgggttctggtggcccatgcagggttt 352
|||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 atttcagctccaatggtaaatggattgtatctttgggttctggtggcccatgcagggttt 781
Query: 353 gggatgtttcttcatcaatagttttagcttctctatcaaatgaaaatcgtgaaatcttta 412
||||| | |||||| ||||| ||||| ||||||||||| | ||||||||||| ||||||
Sbjct: 782 gggatctctcttcaggaatagctttaggttctctatcaactaaaaatcgtgaactcttta 841
Query: 413 gcgcttgcagattctcccaaacaaatgatagcactcgagtactatatattgctgccatgg 472
||| ||||||||||| |||| |||||| |||||| | || ||||||||||||||||
Sbjct: 842 gcggatgcagattctctcaaataaatgagagcacttgggtgctatatattgctgccaata 901
Query: 473 cagataatcgtggaagcatcctgacctgga 502
|||| || |||||||||||||||||||||
Sbjct: 902 cagagaaaggtggaagcatcctgacctgga 931
Score = 222 bits (112), Expect = 2e-57
Identities = 165/183 (90%), Gaps = 6/183 (3%)
Strand = Plus / Plus
Query: 534 tggaacaccttcaggagacattgtaatcgtaagttcaacaaatatgcagattcagaccat 593
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 1026 tggaacaccttcaggagacattgtaattgtaagttcaacaaatatgcagattcagacaac 1085
Query: 594 ggttaaaaaggctcacattggcatagtaactgctttggcattttcccctgattcaaggtt 653
| | || ||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 1086 gataaagaaggctcaccttggcatagtaactgctttggcattctcccctgattca----- 1140
Query: 654 gagggccttggcttctgtatcctgggattcaagtgctagggtaacaataattgaagagaa 713
||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 1141 -agggctttggcttctgtatccatggattcaagtgctagggtaacaataattgaagggaa 1199
Query: 714 gaa 716
|||
Sbjct: 1200 gaa 1202
Score = 63.9 bits (32), Expect = 1e-09
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 726 agctgcttacttcctgaaggttgaacgaattgataagtga 765
||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 1257 agctgcttacttcctcaaggttgaacgaattgaaaagtga 1296