Miyakogusa Predicted Gene
- Lj4g3v2374850.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2374850.1 Non Chatacterized Hit- tr|C5XGZ8|C5XGZ8_SORBI
Putative uncharacterized protein Sb03g044610
OS=Sorghu,32.37,2e-18,DUF3444,Domain of unknown function DUF3444; RING
FINGER PROTEIN,NULL,NODE_15942_length_1736_cov_50.980991.path1.1
(1411 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BW598974 weakly similar to UniRef100_A7NW98 Cluster: Ch... 920 0.0
gnl|LJGI|TC61131 weakly similar to UniRef100_A7NW98 Cluster: Chr... 789 0.0
gnl|LJGI|FS341834 similar to UniRef100_A7NW98 Cluster: Chromosom... 155 9e-37
gnl|LJGI|TC58996 similar to UniRef100_A7QX12 Cluster: Chromosome... 58 2e-07
gnl|LJGI|TC72275 52 1e-05
>gnl|LJGI|BW598974 weakly similar to UniRef100_A7NW98 Cluster: Chromosome chr5
scaffold_2, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr5 scaffold_2, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (8%)
Length = 464
Score = 920 bits (464), Expect = 0.0
Identities = 464/464 (100%)
Strand = Plus / Plus
Query: 316 tttgagtttgttgaaatcttgtcagattacgtcgaaggtgagggtgtgcgcgttgcatac 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttgagtttgttgaaatcttgtcagattacgtcgaaggtgagggtgtgcgcgttgcatac 60
Query: 376 ttatctaagttgaaaggttttgcatgcctctttcgaattacgaaagaagatagccagaca 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttatctaagttgaaaggttttgcatgcctctttcgaattacgaaagaagatagccagaca 120
Query: 436 tttcaaattccactcggggaattatttagattctctcacagagttccatctttcaaaatg 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttcaaattccactcggggaattatttagattctctcacagagttccatctttcaaaatg 180
Query: 496 actggtcaggaaggagtaggtgttcatataggatcttatgaacttgatcctgcatctttg 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 actggtcaggaaggagtaggtgttcatataggatcttatgaacttgatcctgcatctttg 240
Query: 556 ccattgaatcttgaaggtattgctgttcctgaaaattttgatgtcaagattggccaaagt 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccattgaatcttgaaggtattgctgttcctgaaaattttgatgtcaagattggccaaagt 300
Query: 616 tcatctgacagggataatagaagcaatttggctgagaacaaggattcagttgatgatatt 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcatctgacagggataatagaagcaatttggctgagaacaaggattcagttgatgatatt 360
Query: 676 gatgatcttcttgcttctccagcttcgactcagggtcccattgaaattccagattctaaa 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gatgatcttcttgcttctccagcttcgactcagggtcccattgaaattccagattctaaa 420
Query: 736 ttcttcaattttgattccaggaggtcccttgaaaagtttcagat 779
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttcttcaattttgattccaggaggtcccttgaaaagtttcagat 464
>gnl|LJGI|TC61131 weakly similar to UniRef100_A7NW98 Cluster: Chromosome chr5
scaffold_2, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr5 scaffold_2, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (9%)
Length = 789
Score = 789 bits (398), Expect = 0.0
Identities = 398/398 (100%)
Strand = Plus / Plus
Query: 1014 ttcacatcaagtgcacgctgatgctgttgttcagaataagcgttacgccatctttccaaa 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcacatcaagtgcacgctgatgctgttgttcagaataagcgttacgccatctttccaaa 60
Query: 1074 gcaaggtgaagtctgggcactatatagaaattggtcaagtggaatcaaaagttctgacct 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcaaggtgaagtctgggcactatatagaaattggtcaagtggaatcaaaagttctgacct 120
Query: 1134 gaaaaattgggagtatgacatagttgaagttcttggagaaactgatgtgttcatagatgt 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaaaattgggagtatgacatagttgaagttcttggagaaactgatgtgttcatagatgt 180
Query: 1194 tttaatattggagcatgtccctgatttcagttcagttttcagggccaaatcaaatctagg 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttaatattggagcatgtccctgatttcagttcagttttcagggccaaatcaaatctagg 240
Query: 1254 gccgtctgtcaaccttagaaaaatatccaaaaaagagttgcttaggttctcccaccaaat 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gccgtctgtcaaccttagaaaaatatccaaaaaagagttgcttaggttctcccaccaaat 300
Query: 1314 cccaggtttcaggctgacagaagaagagcatggcaatctgagaggcttctgggaacttga 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cccaggtttcaggctgacagaagaagagcatggcaatctgagaggcttctgggaacttga 360
Query: 1374 tcccggtgcgctaccagttcattactatcatgtataag 1411
||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcccggtgcgctaccagttcattactatcatgtataag 398
>gnl|LJGI|FS341834 similar to UniRef100_A7NW98 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 740
Score = 155 bits (78), Expect = 9e-37
Identities = 275/340 (80%), Gaps = 3/340 (0%)
Strand = Plus / Plus
Query: 221 ttaaagtgtatcctagaaagggtgaaacttgggctcttttcaagaattgggatatcaaat 280
||||||||||||| |||||||| ||||| ||||||||||| || ||||||||||||||||
Sbjct: 173 ttaaagtgtatccgagaaagggagaaacctgggctctttttaaaaattgggatatcaaat 232
Query: 281 ggtacatgcatccagaatctaataagcagtatgaatttgagtttgttgaaatcttgtcag 340
|||||||| || || ||| || |||||||| | ||| ||||||| ||||||||||
Sbjct: 233 ggtacatggatgtggagtctcatcgacagtatgatatggagattgttgagatcttgtcag 292
Query: 341 attacgtcgaaggtgagggtgtgcgcgttgcatacttatctaagttgaaaggttttgcat 400
|||| | ||||||| ||| || ||| ||||||| |||||||||||||||| |
Sbjct: 293 attatattgaaggtgtgggagtagttgtttcatacttggctaagttgaaaggtttcgtga 352
Query: 401 gcctctt---tcgaattacgaaagaagatagccagacatttcaaattccactcggggaat 457
| ||||| || || || ||| | | || || ||||||||||||||| | || |
Sbjct: 353 gtctcttctgtccaactatgaagggggctaatcacacatttcaaattccatcagttgatt 412
Query: 458 tatttagattctctcacagagttccatctttcaaaatgactggtcaggaaggagtaggtg 517
|||| |||||||||||||| |||||||||| |||||||||||||||||| ||| |||||
Sbjct: 413 tattcagattctctcacaggattccatcttttaaaatgactggtcaggaaagagcaggtg 472
Query: 518 ttcatataggatcttatgaacttgatcctgcatctttgcc 557
| | | |||||||||||||||||||||||| |||||||||
Sbjct: 473 tccctgtaggatcttatgaacttgatcctgtatctttgcc 512
>gnl|LJGI|TC58996 similar to UniRef100_A7QX12 Cluster: Chromosome chr14 scaffold_211,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (5%)
Length = 827
Score = 58.0 bits (29), Expect = 2e-07
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 238 aagggtgaaacttgggctcttttcaagaattgggatatcaaatgg 282
||||| |||||||||||| |||||| | |||||||||||||||||
Sbjct: 643 aagggagaaacttgggctattttcagggattgggatatcaaatgg 687
>gnl|LJGI|TC72275
Length = 586
Score = 52.0 bits (26), Expect = 1e-05
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1287 agagttgcttaggttctcccaccaaatccc 1316
||||||||| ||||||||||||||||||||
Sbjct: 191 agagttgctgaggttctcccaccaaatccc 220