Miyakogusa Predicted Gene
- Lj4g3v2364200.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2364200.1 Non Chatacterized Hit- tr|B9SU07|B9SU07_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,32.68,2e-17,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
mTERF,Mitochodrial transcription termination factor,CUFF.50809.1
(1144 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC79714 weakly similar to UniRef100_A7PTX3 Cluster: Chr... 848 0.0
gnl|LJGI|GO024260 weakly similar to UniRef100_A7NW61 Cluster: Ch... 470 e-131
gnl|LJGI|BW631473 weakly similar to UniRef100_A7NW61 Cluster: Ch... 432 e-120
gnl|LJGI|TC80892 weakly similar to UniRef100_A7NW61 Cluster: Chr... 186 2e-46
gnl|LJGI|AV765169 weakly similar to UniRef100_A7NW61 Cluster: Ch... 165 8e-40
gnl|LJGI|TC77615 weakly similar to UniRef100_A7NW61 Cluster: Chr... 115 6e-25
gnl|LJGI|TC72488 56 5e-07
>gnl|LJGI|TC79714 weakly similar to UniRef100_A7PTX3 Cluster: Chromosome chr7
scaffold_31, whole genome shotgun sequence; n=2; Vitis
vinifera|Rep: Chromosome chr7 scaffold_31, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (10%)
Length = 1406
Score = 848 bits (428), Expect = 0.0
Identities = 866/1007 (85%), Gaps = 10/1007 (0%)
Strand = Plus / Plus
Query: 140 cttctgataaacaatcattcaccctttcctacttcacaaacacttgtggcttctcacacc 199
|||||||||||||||| ||||| ||||||||||||| |||| ||||| ||||||||||
Sbjct: 199 cttctgataaacaatccttcactgtttcctacttcactaacaactgtggattctcacacc 258
Query: 200 aagctgctctcaaagcagccaaccgagttcgtttcgatgacgcaaacaagcccgattcgg 259
||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 259 aagctgctctcaaagcatccaaccgagttcttttcgatgacgcaaacaagcccgactcgg 318
Query: 260 tcatcgccttcttcacaaaccacggtttctccatctctcagatacacatcatcattcgca 319
| ||||||||||||||||||||||||||||||||||| |||| ||| | |||||| |||
Sbjct: 319 ttatcgccttcttcacaaaccacggtttctccatctcccagacacagaacatcatcggca 378
Query: 320 ggttaccagagctgcttgtattcgaccccaccaaaacgcttttgcctaagcttcaattca 379
| |||||||||| ||| || | |||||||||||| | ||||||||||| ||||||||
Sbjct: 379 aggtaccagagcttcttacatgcaaccccaccaaaagggttttgcctaagtttcaattct 438
Query: 380 tagcctccaaaggttctgacatagtcaccactgtgactaagagcccgtatttgctgcgcc 439
|||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| ||
Sbjct: 439 tagcctccaaaggttctgacgtagtcaccactgtgactaggagcccgtatttcctgtgca 498
Query: 440 aaagccttgagaattacataatacctgcatttgaatttgtaaggacattctgcccatctg 499
|||| ||||||||| |||| ||||||| |||||||||||||||||| ||||||| |||||
Sbjct: 499 aaagtcttgagaatcacattatacctgtatttgaatttgtaaggacgttctgccaatctg 558
Query: 500 atgaaaaagcaatcgattgtgtactatttggttccaatatcattactattgatcaatgga 559
|||||| |||||||| ||||||||||||||||||||||| |||| |||||||| ||
Sbjct: 559 atgaaagagcaatcgcttgtgtactatttggttccaataccattgttattgatcgcatga 618
Query: 560 aatcaaaagtaaatttgttgcttgatatgggagtgtctcccacaaacatatacattttgc 619
||||||||||||| ||||||||| ||||||||||| ||||| ||||||| || ||||
Sbjct: 619 aatcaaaagtaaaattgttgcttaatatgggagtgactccctcaaacatccaccagttgc 678
Query: 620 ttagaactaggcccaatatgctcagatgtgctgacttgaagttgaaggaggctgtggagg 679
||| ||| ||||| | |||||| |||||||||| |||| ||||||||||| ||
Sbjct: 679 ttactacttggccctctgtgctcaaatgtgctgac------ttgacggaggctgtggtgg 732
Query: 680 aactcaagggattgggattccatccttccaaaactgcttttagttt-tgccttactagcc 738
|| |||||||||||||||| ||||| |||||| | || ||| |||| || |||| | |
Sbjct: 733 aagtcaagggattgggatttcatccctccaaatc-gcattttgtttcagcattacgggtc 791
Query: 739 aaaagggctatggtcaaatctaattgggatgcgaaagtcgatgcgtttaagacctggggc 798
||||||| ||| |||||| ||||||||| ||| ||||||| |||||||| ||||||
Sbjct: 792 aaaaggggtatatccaaatcgccttgggatgccaaactcgatgcctttaagacatggggc 851
Query: 799 tggtctgaagatgctgttctccttgcatttaagagggaaccccgctttatgctatactca 858
|| ||||||||||| |||| |||||||| |||| | |||| | | ||||||||||||
Sbjct: 852 tgccctgaagatgctattctggatgcatttaggaggtatccccacatgatgctatactca 911
Query: 859 atcaaaaaactaaatgcagtgatgagtttttgggtaggtcatcttggttgggacccttca 918
||||||||| | ||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 912 atcaaaaaagttaatgcagtgatgagtttttgggtcgtccatcttggttgggacccttca 971
Query: 919 gtgcttctagcagtgccagcactatttggatttagtttggagaaaaggcttgtgccgagg 978
||||||||||| |||||| |||| ||| ||| |||||||||||||||||| | || |||
Sbjct: 972 gtgcttctagccgtgccaacacttttttcattaagtttggagaaaaggcttatcccaagg 1031
Query: 979 gcttcagttctcaagtatcttctctccagaggtttgatgaagaaggatgctagcttaagt 1038
||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1032 gcttcagttgtccagtatcttctctccagaggattgatgaagaaggatgctagcttaagt 1091
Query: 1039 gcaccattttttatg-actgagaagtcattcctgcaaaagtttgtgaaaagttttgagga 1097
||||| ||| |||| ||||| ||| |||| |||||| |||||||| ||||||||||
Sbjct: 1092 acacca-tttatatgtactgacaagctgttccagcaaaaatttgtgaattgttttgagga 1150
Query: 1098 ggaggaaacatctaggatactaagtctatatcggggaggacgctagc 1144
||||||| |||||| | ||||||||||||||||||||||| ||||||
Sbjct: 1151 ggaggaagcatctaagctactaagtctatatcggggaggaagctagc 1197
Score = 71.9 bits (36), Expect = 8e-12
Identities = 86/102 (84%), Gaps = 3/102 (2%)
Strand = Plus / Plus
Query: 1 atgtttcacgctcactgtctcagagcttttctccgccgccgcactttctcccaaccacca 60
|||||||||| ||| ||||||||||||| ||||| || |||||||||||||| |||||
Sbjct: 54 atgtttcacggtcatcgtctcagagctttcttccgctgcagcactttctcccaaacacca 113
Query: 61 ccaacctccaaatgttacgtttttcttc---aactgaaaccc 99
||||||| |||||| || || |||||| |||||||||||
Sbjct: 114 ccaaccttaaaatgtcaccttcttcttctgcaactgaaaccc 155
>gnl|LJGI|GO024260 weakly similar to UniRef100_A7NW61 Cluster: Chromosome chr5
scaffold_2, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr5 scaffold_2, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (4%)
Length = 544
Score = 470 bits (237), Expect = e-131
Identities = 477/552 (86%), Gaps = 10/552 (1%)
Strand = Plus / Plus
Query: 541 attactattgatcaatggaaatcaaaagtaaatttgttgcttgatatgggagtgtctccc 600
|||||||||||||| ||||||||||||||| ||||||||| ||||||||||| |||||
Sbjct: 1 attactattgatcacatgaaatcaaaagtaaaattgttgcttcatatgggagtgcctccc 60
Query: 601 acaaacatatacattttgcttagaactaggcccaatatgctcagatgtgctgacttgaag 660
||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 61 tcaaacatataccttttgcttagaactaggcccactatactcagatgtgctgacttgaac 120
Query: 661 ttgaaggaggctgtggaggaactcaagggattgggattccatccttccaaaactgctttt 720
||||||||||||||| |||||||||||||||| ||||| |||||| | || |||
Sbjct: 121 ------gaggctgtggaggaagtcaagggattgggatttcatccctccaaatc-gcattt 173
Query: 721 agtttt-gccttactagccaaaagggctatggtcaaatctaattgggatgcgaaagtcga 779
||| | || |||| |||||||||| ||| |||||| ||||||||| ||||||||
Sbjct: 174 tgttgtagcgttacaggccaaaaggggtatatccaaatcactttgggatgccaaagtcga 233
Query: 780 tgcgtttaagacctggggctggtctgaagatgctgttctccttgcatttaagagggaacc 839
||| |||||||| || |||||||||||||||||| || | |||||||| |||| | ||
Sbjct: 234 tgcctttaagacatgtggctggtctgaagatgctattttggatgcatttaggaggaatcc 293
Query: 840 ccgctttatgctatactcaatcaaaaaactaaatgcagtgatgagtttttgggtaggtca 899
|| | ||||||||| ||||||||||||| | ||||||||||||||||||||||| || |
Sbjct: 294 ccacattatgctatgctcaatcaaaaaagttaatgcagtgatgagtttttgggtcggccg 353
Query: 900 tcttggttgggacccttcagtgcttctagcagtgccagcactatttggatttagtttgga 959
|||||||||||||||||||||||||||||| |||||| |||| ||| ||| ||||||||
Sbjct: 354 tcttggttgggacccttcagtgcttctagccgtgccatcacttttttcattaagtttgga 413
Query: 960 gaaaaggcttgtgccgagggcttcagttctcaagtatcttctctccagaggtttgatgaa 1019
|||||||||| | || |||||||||||| || ||||||||||||||||||| ||||||||
Sbjct: 414 gaaaaggcttatcccaagggcttcagttgtccagtatcttctctccagaggattgatgaa 473
Query: 1020 gaaggatgctagcttaagtgcaccattttttatg-actgagaagtcattcctgcaaaagt 1078
||||||||||||||||||| ||||| ||| |||| |||||||||| |||||||||||||
Sbjct: 474 gaaggatgctagcttaagtacacca-tttatatgtactgagaagtatttcctgcaaaagt 532
Query: 1079 ttgtgaaaagtt 1090
||||||| ||||
Sbjct: 533 ttgtgaatagtt 544
>gnl|LJGI|BW631473 weakly similar to UniRef100_A7NW61 Cluster: Chromosome chr5
scaffold_2, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr5 scaffold_2, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (5%)
Length = 475
Score = 432 bits (218), Expect = e-120
Identities = 386/447 (86%)
Strand = Plus / Plus
Query: 12 tcactgtctcagagcttttctccgccgccgcactttctcccaaccaccaccaacctccaa 71
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||
Sbjct: 25 tcactgtctcagagcttttctccgccgcagcattttctcccaaccaccaccaacctcaaa 84
Query: 72 atgttacgtttttcttcaactgaaacccttccattcacccnnnnnnnnnnnnnnnaccac 131
|||| || | |||| ||| |||||||||||||||||||| |||||
Sbjct: 85 atgtcaccatcttctgcaattgaaacccttccattcacccctctctctcttctctaccac 144
Query: 132 ttctcattcttctgataaacaatcattcaccctttcctacttcacaaacacttgtggctt 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ttctcattcttctgataaacaatcattcaccctttcctacttcacaaacacttgtggctt 204
Query: 192 ctcacaccaagctgctctcaaagcagccaaccgagttcgtttcgatgacgcaaacaagcc 251
|||| |||||||||||||||||||||||| |||||||||||||| |||| | |||||
Sbjct: 205 ctcatcccaagctgctctcaaagcagccaagcgagttcgtttcgacaccgcagagaagcc 264
Query: 252 cgattcggtcatcgccttcttcacaaaccacggtttctccatctctcagatacacatcat 311
||||| || || ||||||||||||||||| ||||||||||||||||||| ||||| |||
Sbjct: 265 tgattcagttattgccttcttcacaaaccagggtttctccatctctcagacacacagcat 324
Query: 312 cattcgcaggttaccagagctgcttgtattcgaccccaccaaaacgcttttgcctaagct 371
|||||||||| |||||||| | ||| ||||||||||||||| || | ||||||| ||| |
Sbjct: 325 cattcgcagggtaccagaggtacttttattcgaccccaccataagggttttgcccaagtt 384
Query: 372 tcaattcatagcctccaaaggttctgacatagtcaccactgtgactaagagcccgtattt 431
|||||| |||||||||| |||| ||||||||| ||||||||| ||| || |||||||||
Sbjct: 385 tcaatttctagcctccaagggttttgacatagtgaccactgtgtctaggaccccgtattt 444
Query: 432 gctgcgccaaagccttgagaattacat 458
|||| |||||||||||||| ||||
Sbjct: 445 cctgcttaaaagccttgagaatcacat 471
>gnl|LJGI|TC80892 weakly similar to UniRef100_A7NW61 Cluster: Chromosome chr5
scaffold_2, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr5 scaffold_2, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (5%)
Length = 488
Score = 186 bits (94), Expect = 2e-46
Identities = 211/250 (84%)
Strand = Plus / Plus
Query: 144 tgataaacaatcattcaccctttcctacttcacaaacacttgtggcttctcacaccaagc 203
|||||||||||| ||||| |||||||||||| || || ||||| ||||||||||||||
Sbjct: 125 tgataaacaatccttcactgtttcctacttcaaaaccaactgtggattctcacaccaagc 184
Query: 204 tgctctcaaagcagccaaccgagttcgtttcgatgacgcaaacaagcccgattcggtcat 263
|||||||||||| |||| ||||||| ||| | ||||||||||| |||||||| |||||
Sbjct: 185 agctctcaaagcatccaagcgagttctcttcaacgacgcaaacaaacccgattcagtcat 244
Query: 264 cgccttcttcacaaaccacggtttctccatctctcagatacacatcatcattcgcaggtt 323
| ||||||||||||||||||||||| || |||| || | ||||| | ||||| ||||
Sbjct: 245 caccttcttcacaaaccacggtttcaccctctcccaaacacacaacgtcattggcagaac 304
Query: 324 accagagctgcttgtattcgaccccaccaaaacgcttttgcctaagcttcaattcatagc 383
||||||||| ||| | ||||||||||||| || |||| |||| ||| ||||||| ||||
Sbjct: 305 accagagcttcttctcttcgaccccaccacaaagcttctgcccaagtttcaatttctagc 364
Query: 384 ctccaaaggt 393
||||||||||
Sbjct: 365 ctccaaaggt 374
>gnl|LJGI|AV765169 weakly similar to UniRef100_A7NW61 Cluster: Chromosome chr5
scaffold_2, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr5 scaffold_2, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (4%)
Length = 573
Score = 165 bits (83), Expect = 8e-40
Identities = 224/271 (82%)
Strand = Plus / Minus
Query: 865 aaactaaatgcagtgatgagtttttgggtaggtcatcttggttgggacccttcagtgctt 924
||||| ||||||||||||| ||| ||||| | ||| ||||||||||| |||| | ||||
Sbjct: 476 aaactcaatgcagtgatgaatttgtgggttgatcagcttggttgggatacttcggcgctt 417
Query: 925 ctagcagtgccagcactatttggatttagtttggagaaaaggcttgtgccgagggcttca 984
||||| | || | ||||||||| ||| |||||||| ||| || | || |||||||||
Sbjct: 416 ctagctgcaccgataatatttggatatagcttggagaagaggattattccaagggcttca 357
Query: 985 gttctcaagtatcttctctccagaggtttgatgaagaaggatgctagcttaagtgcacca 1044
||| |||||||||||||||| | |||||||||||||||||| |||||||||| | |||||
Sbjct: 356 gttgtcaagtatcttctctctaaaggtttgatgaagaaggaagctagcttaactacacca 297
Query: 1045 ttttttatgactgagaagtcattcctgcaaaagtttgtgaaaagttttgaggaggaggaa 1104
||| | ||||||| || |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 296 tttggtttgactgatgagctgttcctgcaaaagttcgtgaactgttttgagaaggaggaa 237
Query: 1105 acatctaggatactaagtctatatcggggag 1135
||||||||| | ||||| || |||| |||||
Sbjct: 236 acatctaggctgctaaggctgtatcagggag 206
>gnl|LJGI|TC77615 weakly similar to UniRef100_A7NW61 Cluster: Chromosome chr5
scaffold_2, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr5 scaffold_2, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (4%)
Length = 482
Score = 115 bits (58), Expect = 6e-25
Identities = 139/166 (83%)
Strand = Plus / Plus
Query: 943 tttggatttagtttggagaaaaggcttgtgccgagggcttcagttctcaagtatcttctc 1002
||||||||||||||||||| |||| |||| || |||||||||||| | |||||||||||
Sbjct: 96 tttggatttagtttggagacaaggattgttccaagggcttcagttgttcagtatcttctc 155
Query: 1003 tccagaggtttgatgaagaaggatgctagcttaagtgcaccattttttatgactgagaag 1062
|| | ||||||||||||||| | |||||| ||| | |||| |||| | ||||||| |||
Sbjct: 156 tctaaaggtttgatgaagaaaggtgctagtttagttacacctttttgtttgactgataag 215
Query: 1063 tcattcctgcaaaagtttgtgaaaagttttgaggaggaggaaacat 1108
| |||||||| |||||||| | | |||||||| ||| ||||||||
Sbjct: 216 ttgttcctgcagaagtttgttacatgttttgagaagggggaaacat 261
>gnl|LJGI|TC72488
Length = 631
Score = 56.0 bits (28), Expect = 5e-07
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 441 aagccttgagaattacataatacctgcatttgaatttgtaaggacattctgcccatctga 500
|||||||||||| ||||||| ||||| | |||||| ||||||| |||||| || |||||
Sbjct: 481 aagccttgagaagcacataatccctgcttatgaattggtaaggagattctgtccttctga 540
Query: 501 tgaaaaagcaat 512
|| ||| |||||
Sbjct: 541 tgcaaaggcaat 552