Miyakogusa Predicted Gene
- Lj4g3v2295970.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2295970.1 tr|Q6J738|Q6J738_MEDTR AML5 OS=Medicago
truncatula GN=MTR_2g049640 PE=2 SV=1,78.84,0,no
description,Nucleotide-binding, alpha-beta plait; RNA recognition
motif,RNA recognition motif
dom,NODE_10188_length_1410_cov_121.843262.path1.1
(1449 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC81572 similar to UniRef100_Q6J738 Cluster: AML5 (RNA-... 1552 0.0
gnl|LJGI|BP063593 weakly similar to UniRef100_Q6J738 Cluster: AM... 285 4e-76
gnl|LJGI|AV406605 similar to UniRef100_Q6J738 Cluster: AML5 (RNA... 141 1e-32
gnl|LJGI|TC64639 similar to UniRef100_Q6J739 Cluster: AML1; n=1;... 74 3e-12
>gnl|LJGI|TC81572 similar to UniRef100_Q6J738 Cluster: AML5 (RNA-binding region RNP-1
(RNA recognition motif); RNA recognition motif 2); n=1;
Medicago truncatula|Rep: AML5 (RNA-binding region RNP-1
(RNA recognition motif); RNA recognition motif 2) -
Medicago truncatula (Barrel medic), partial (27%)
Length = 1056
Score = 1552 bits (783), Expect = 0.0
Identities = 783/783 (100%)
Strand = Plus / Plus
Query: 1 atgaagcagtcttttgatcctacatcctggggtccttccaggattccatctataaatgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atgaagcagtcttttgatcctacatcctggggtccttccaggattccatctataaatgta 333
Query: 61 cctggaaaaccagggcgtggtccatggggggttttatctggatctgattcataccatgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cctggaaaaccagggcgtggtccatggggggttttatctggatctgattcataccatgcc 393
Query: 121 tcatctgatgccagcctattttctagctcattacctgttcttccacatgaaaaattgaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tcatctgatgccagcctattttctagctcattacctgttcttccacatgaaaaattgaac 453
Query: 181 ttaaatgacactgaaaataattatcaatctgttgatgacatctcatccggctttaaaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttaaatgacactgaaaataattatcaatctgttgatgacatctcatccggctttaaaaag 513
Query: 241 ctccatcaagatgtagcggttaatgattcccttgaaaatggtgataatgatgcaatcgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ctccatcaagatgtagcggttaatgattcccttgaaaatggtgataatgatgcaatcgga 573
Query: 301 accatgcttcctgatgatgaggaggagcttttagctggcataatggatgattttaatcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 accatgcttcctgatgatgaggaggagcttttagctggcataatggatgattttaatcta 633
Query: 361 agtgatttgcctggttccctcgaggacttggaagagtatgacttttttggtagtggtgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 agtgatttgcctggttccctcgaggacttggaagagtatgacttttttggtagtggtgga 693
Query: 421 ggtatggaactagaaactgatccccaggaaactctcagtgtcggtatgtcaaatttaagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ggtatggaactagaaactgatccccaggaaactctcagtgtcggtatgtcaaatttaagc 753
Query: 481 ttctctgatagttctcttggcaatggtttgcccaattattctatccctaatggtgtggga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ttctctgatagttctcttggcaatggtttgcccaattattctatccctaatggtgtggga 813
Query: 541 attgttgctggagaacatccatatggagagcatccttctcgaaccttatttgttcgaaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 attgttgctggagaacatccatatggagagcatccttctcgaaccttatttgttcgaaat 873
Query: 601 attaacagtaatgttgaggattcggagctaaaggccctttttgagcaatatggtgatatt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 attaacagtaatgttgaggattcggagctaaaggccctttttgagcaatatggtgatatt 933
Query: 661 agaaccctgtatactgcatgtaagcaccgggggtttgtaatgatatcgtactatgacatc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 agaaccctgtatactgcatgtaagcaccgggggtttgtaatgatatcgtactatgacatc 993
Query: 721 cgtgctgctcgaacagctatgcgctcattacaaaacaagcctctacggcgcaggaaactt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 cgtgctgctcgaacagctatgcgctcattacaaaacaagcctctacggcgcaggaaactt 1053
Query: 781 gac 783
|||
Sbjct: 1054 gac 1056
>gnl|LJGI|BP063593 weakly similar to UniRef100_Q6J738 Cluster: AML5 (RNA-binding
region RNP-1 (RNA recognition motif); RNA recognition
motif 2); n=1; Medicago truncatula|Rep: AML5
(RNA-binding region RNP-1 (RNA recognition motif); RNA
recognition motif 2) - Medicago truncatula (Barrel
medic), partial (6%)
Length = 536
Score = 285 bits (144), Expect = 4e-76
Identities = 148/150 (98%)
Strand = Plus / Plus
Query: 1 atgaagcagtcttttgatcctacatcctggggtccttccaggattccatctataaatgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atgaagcagtcttttgatcctacatcctggggtccttccaggattccatctataaatgta 446
Query: 61 cctggaaaaccagggcgtggtccatggggggttttatctggatctgattcataccatgcc 120
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 447 cctggaaaaccanggcgtggtccatggggggttttatctggatctgattcataccatgnc 506
Query: 121 tcatctgatgccagcctattttctagctca 150
||||||||||||||||||||||||||||||
Sbjct: 507 tcatctgatgccagcctattttctagctca 536
>gnl|LJGI|AV406605 similar to UniRef100_Q6J738 Cluster: AML5 (RNA-binding region RNP-1
(RNA recognition motif); RNA recognition motif 2); n=1;
Medicago truncatula|Rep: AML5 (RNA-binding region RNP-1
(RNA recognition motif); RNA recognition motif 2) -
Medicago truncatula (Barrel medic), partial (13%)
Length = 412
Score = 141 bits (71), Expect = 1e-32
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1379 caaaattcagccaatatcatggagctttgcccacttttggtccatcaacatcaaatggat 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaaattcagccaatatcatggagctttgcccacttttggtccatcaacatcaaatggat 60
Query: 1439 cttcaatcgaa 1449
|||||||||||
Sbjct: 61 cttcaatcgaa 71
>gnl|LJGI|TC64639 similar to UniRef100_Q6J739 Cluster: AML1; n=1; Medicago
truncatula|Rep: AML1 - Medicago truncatula (Barrel
medic), partial (14%)
Length = 744
Score = 73.8 bits (37), Expect = 3e-12
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 290 atgcaatcggaaccatgcttcctgatgatgaggaggagcttttagctggcataatggatg 349
||||||| |||| | ||||||| |||||||| || |||||||||||||| ||||||||||
Sbjct: 511 atgcaattggaaacctgcttccggatgatgaagatgagcttttagctgggataatggatg 570
Query: 350 atttt 354
|||||
Sbjct: 571 atttt 575