Miyakogusa Predicted Gene
- Lj4g3v2295880.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2295880.1 Non Chatacterized Hit- tr|I1L257|I1L257_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.37462
PE,84.88,0,PHY,Phytochrome, central region; PAS,PAS fold; PAS_2,PAS
fold-2; GAF,GAF domain; Domain present in
p,NODE_37971_length_2753_cov_7.908827.path2.1
(2592 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|AU088958 similar to UniRef100_Q2HRN2 Cluster: Bacteriop... 864 0.0
gnl|LJGI|TC82095 similar to UniRef100_Q2HRN2 Cluster: Bacterioph... 155 2e-36
gnl|LJGI|TC69456 UniRef100_A1IIA2 Cluster: Phytochrome b; n=1; L... 82 2e-14
gnl|LJGI|TC82545 similar to UniRef100_P93673 Cluster: Phytochrom... 56 1e-06
>gnl|LJGI|AU088958 similar to UniRef100_Q2HRN2 Cluster: Bacteriophytochrome; n=1;
Medicago truncatula|Rep: Bacteriophytochrome - Medicago
truncatula (Barrel medic), partial (12%)
Length = 608
Score = 864 bits (436), Expect = 0.0
Identities = 458/466 (98%), Gaps = 1/466 (0%)
Strand = Plus / Plus
Query: 2098 gccaatgcctgcactagtagggactacacaaatgccattgttggggtgtgctttgtaggt 2157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gccaatgcctgcactagtagggactacacaaatgccattgttggggtgtgctttgtaggt 62
Query: 2158 caagacataactcacgagaaagtggttctagacaagttcatcaagttggaaggtgattac 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 caagacataactcacgagaaagtggttctagacaagttcatcaagttggaaggtgattac 122
Query: 2218 aaagccatcatacagagtctcaatccattaattccacccattttcgcttctgatgagaat 2277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 aaagccatcatacagagtctcaatccattaattccacccattttcgcttctgatgagaat 182
Query: 2278 gcatgctgctctgaatggaatgcagccatggaaaagctaactggttggaagagagaagaa 2337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gcatgctgctctgaatggaatgcagccatggaaaagctaactggttggaagagagaagaa 242
Query: 2338 gtcataggaaaattacttcctggggagatctttgggaacttttgtcaattgaaaggtcaa 2397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gtcataggaaaattacttcctggggagatctttgggaacttttgtcaattgaaaggtcaa 302
Query: 2398 gatacactcactaactttatgattttactgtatcgcggactaagtggtcaagattccgag 2457
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 303 gatacactcactaactttatgattttactgtatcncggactaagtggtcaagattccgan 362
Query: 2458 aagttaccatttggattttttgatagaaatggaaaatttgttgaggtttatataacagca 2517
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 363 aagttaccatttggattttttgatanaaatggaaaatttgttgangtttatataacagca 422
Query: 2518 agcaagaggaacgatgcggct-gggaatatgataggctgtttctgc 2562
||||| | |||| |||||||| ||||||||||||||||||||||||
Sbjct: 423 agcaanaagaacnatgcggctggggaatatgataggctgtttctgc 468
>gnl|LJGI|TC82095 similar to UniRef100_Q2HRN2 Cluster: Bacteriophytochrome; n=1;
Medicago truncatula|Rep: Bacteriophytochrome - Medicago
truncatula (Barrel medic), partial (24%)
Length = 1075
Score = 155 bits (78), Expect = 2e-36
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 2515 gcaagcaagaggaacgatgcggctgggaatatgataggctgtttctgcttcttgcagatc 2574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcaagcaagaggaacgatgcggctgggaatatgataggctgtttctgcttcttgcagatc 60
Query: 2575 gtgtcgcgagatccgagc 2592
||||||||||||||||||
Sbjct: 61 gtgtcgcgagatccgagc 78
>gnl|LJGI|TC69456 UniRef100_A1IIA2 Cluster: Phytochrome b; n=1; Lotus japonicus|Rep:
Phytochrome b - Lotus japonicus, complete
Length = 4160
Score = 81.8 bits (41), Expect = 2e-14
Identities = 128/157 (81%)
Strand = Plus / Plus
Query: 704 ttactggatatgatagggttatggtttataagtttcatgaggatgaccatggtgaagttg 763
||||||| || || ||||| |||||||| ||||| ||||||||||| || || || ||||
Sbjct: 821 ttactggctacgacagggtgatggtttacaagttccatgaggatgagcacggcgaggttg 880
Query: 764 tgtctgagattaggaggtcagatttagagccttacttgggtttgcattatcctgccacag 823
|| | |||| | |||| ||||||| ||||| ||| ||||||||||||| |||||||| |
Sbjct: 881 tggcggagagcaagagggcagatttggagccgtacatgggtttgcattaccctgccacgg 940
Query: 824 atatcccacaagctgcacgcttcttgttcaagcagaa 860
| ||||| || ||| | | || ||||||||||||||
Sbjct: 941 acatccctcaggcttcgaggtttttgttcaagcagaa 977
Score = 73.8 bits (37), Expect = 5e-12
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 1522 ttctggttcaggtctcacactgctaaggaaatgaaatggggaggagccaagcatcatcca 1581
||||||||||| || ||||| || |||||||| |||||||| || || |||||||| ||
Sbjct: 1669 ttctggttcagatcacacacggcgaaggaaataaaatggggtggtgcaaagcatcacccg 1728
Query: 1582 gaggataaggatgatgg 1598
|||||||||||||||||
Sbjct: 1729 gaggataaggatgatgg 1745
Score = 71.9 bits (36), Expect = 2e-11
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 1117 tatgcttgtgagttcctaatgcaggcttttggcctgcagctttacatggagattca 1172
||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct: 1264 tatgcttgtgagttcctcatgcaggcttttgggctgcagctgaacatggagcttca 1319
>gnl|LJGI|TC82545 similar to UniRef100_P93673 Cluster: Phytochrome type A; n=1;
Lathyrus sativus|Rep: Phytochrome type A - Lathyrus
sativus (Chickling vetch), partial (22%)
Length = 762
Score = 56.0 bits (28), Expect = 1e-06
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 712 tatgatagggttatggtttataagtttcatgaggatgaccatgg 755
||||||||||| |||| |||||| |||||||||||||| |||||
Sbjct: 38 tatgatagggtgatggcttataaatttcatgaggatgatcatgg 81