Miyakogusa Predicted Gene
- Lj4g3v2290280.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2290280.1 Non Chatacterized Hit- tr|H3GI31|H3GI31_PHYRM
Uncharacterized protein OS=Phytophthora ramorum
GN=fge,36.73,0.000000000000002,Tetratricopeptide
repeats,Tetratricopeptide repeat; TPR,Tetratricopeptide repeat;
TPR_REGION,Tetratr,CUFF.50708.1
(1434 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC66227 similar to UniRef100_A7Q8G7 Cluster: Chromosome... 926 0.0
gnl|LJGI|TC57607 similar to UniRef100_A7Q8G7 Cluster: Chromosome... 924 0.0
gnl|LJGI|TC77921 homologue to UniRef100_A7Q8G7 Cluster: Chromoso... 274 1e-72
>gnl|LJGI|TC66227 similar to UniRef100_A7Q8G7 Cluster: Chromosome chr5 scaffold_64,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_64, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (32%)
Length = 714
Score = 926 bits (467), Expect = 0.0
Identities = 467/467 (100%)
Strand = Plus / Plus
Query: 968 ggggtatggattctgagtttggcggcggagggcatgatgggggtggcacaactactgagc 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggggtatggattctgagtttggcggcggagggcatgatgggggtggcacaactactgagc 60
Query: 1028 tggaggggcttccaccacctcctgctggggtatcaggttctgctgccaaaggcaagggga 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggaggggcttccaccacctcctgctggggtatcaggttctgctgccaaaggcaagggga 120
Query: 1088 tggacaattacaagcaggggcagtttgctgatgctattaagtggctttcatgggctgtca 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggacaattacaagcaggggcagtttgctgatgctattaagtggctttcatgggctgtca 180
Query: 1148 ttcttctagagaaagctggggatgatgcaggctcagtggaggttttgtcatgcagggctt 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttcttctagagaaagctggggatgatgcaggctcagtggaggttttgtcatgcagggctt 240
Query: 1208 catgttacaaagaagttggggagtataaaaaggcagtggcggattgtacaaagattcttg 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 catgttacaaagaagttggggagtataaaaaggcagtggcggattgtacaaagattcttg 300
Query: 1268 aaaacaatgaaaccaatgtatctgtcctggtacagcgtgctctcctgtatgagagcatgg 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaacaatgaaaccaatgtatctgtcctggtacagcgtgctctcctgtatgagagcatgg 360
Query: 1328 aaaagtacaaacttggcgcggaagacctgaggaatgtgctgaagattgatcccagtaata 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaagtacaaacttggcgcggaagacctgaggaatgtgctgaagattgatcccagtaata 420
Query: 1388 gggttgctagaagtactattcaccgattggttaagatggccgattaa 1434
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gggttgctagaagtactattcaccgattggttaagatggccgattaa 467
>gnl|LJGI|TC57607 similar to UniRef100_A7Q8G7 Cluster: Chromosome chr5 scaffold_64,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_64, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 836
Score = 924 bits (466), Expect = 0.0
Identities = 492/502 (98%), Gaps = 9/502 (1%)
Strand = Plus / Minus
Query: 213 gaaaccatcatggacccaccaacccgctccggcc---------gcgttaccgggtcaacc 263
|||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 502 gaaaccatcatggacccaccaacccgttccggcccaaaccgccgcgttaccgggtcaacc 443
Query: 264 accgtccatggccggagacatcttcggcaagagctggggatccgctcaaccttctgctcc 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 accgtccatggccggagacatcttcggcaagagctggggatccgctcaaccttctgctcc 383
Query: 324 aaccattggaatcgtcaacaaaaaccctaacctcttcggtgatttggttagctctgcttt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaccattggaatcgtcaacaaaaaccctaacctcttcggtgatttggttagctctgcttt 323
Query: 384 gggacaaggttccaagtcttcttctggtagcaccaatgttcctctgaaaaatgcagcttc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gggacaaggttccaagtcttcttctggtagcaccaatgttcctctgaaaaatgcagcttc 263
Query: 444 tacaaccaaaaccacctcattctccatggggaatatggccaattcattgcccaaaactgg 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tacaaccaaaaccacctcattctccatggggaatatggccaattcattgcccaaaactgg 203
Query: 504 taatgctcctcagagtagcggttctacttggggatcttcttctgggagttttggtgtgaa 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 taatgctcctcagagtagcggttctacttggggatcttcttctgggagttttggtgtgaa 143
Query: 564 taagagttccaatcttgggggtgcttcaattggaagtggaatcaattctggtaacaagga 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 taagagttccaatcttgggggtgcttcaattggaagtggaatcaattctggtaacaagga 83
Query: 624 tccatttagttctttgggtgttgggattggaaccaagcaatcttcttctgcttcagctag 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 tccatttagttctttgggtgttgggattggaaccaagcaatcttcttctgcttcagctag 23
Query: 684 tcttaattcagctcctaaagct 705
||||||||||||||||||||||
Sbjct: 22 tcttaattcagctcctaaagct 1
Score = 281 bits (142), Expect = 6e-75
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 1 atgaattccaattacggcagatccaattccaacccacaaaaaacagcttcatcttctccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 atgaattccaattacggcagatccaattccaacccacaaaaaacagcttcatcttctccc 655
Query: 61 tccgtttcactcaacaacttcaatttcgattttgatctcggcatcggatccaatcgaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tccgtttcactcaacaacttcaatttcgattttgatctcggcatcggatccaatcgaccc 595
Query: 121 aaatccctaatcgatcagaaaa 142
||||||||||||||||||||||
Sbjct: 594 aaatccctaatcgatcagaaaa 573
>gnl|LJGI|TC77921 homologue to UniRef100_A7Q8G7 Cluster: Chromosome chr5 scaffold_64,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_64, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (7%)
Length = 484
Score = 274 bits (138), Expect = 1e-72
Identities = 141/142 (99%)
Strand = Plus / Plus
Query: 1 atgaattccaattacggcagatccaattccaacccacaaaaaacagcttcatcttctccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 atgaattccaattacggcagatccaattccaacccacaaaaaacagcttcatcttctccc 210
Query: 61 tccgtttcactcaacaacttcaatttcgattttgatctcggcatcggatccaatcgaccc 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 211 tccgtttcactcaacaacttcaatttcgactttgatctcggcatcggatccaatcgaccc 270
Query: 121 aaatccctaatcgatcagaaaa 142
||||||||||||||||||||||
Sbjct: 271 aaatccctaatcgatcagaaaa 292
Score = 178 bits (90), Expect = 6e-44
Identities = 113/122 (92%), Gaps = 9/122 (7%)
Strand = Plus / Plus
Query: 213 gaaaccatcatggacccaccaacccgctccggcc---------gcgttaccgggtcaacc 263
|||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 363 gaaaccatcatggacccaccaacccgctccggcccaaaccgccgcgttaccgggtcaacc 422
Query: 264 accgtccatggccggagacatcttcggcaagagctggggatccgctcaaccttctgctcc 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 accgtccatggccggagacatcttcggcaagagctggggatccgctcaaccttctgctcc 482
Query: 324 aa 325
||
Sbjct: 483 aa 484