Miyakogusa Predicted Gene
- Lj4g3v2249070.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj4g3v2249070.1 tr|A6MZI1|A6MZI1_ORYSI Novel plant snare 11
(Fragment) OS=Oryza sativa subsp. indica PE=2 SV=1,78.38,9e-18,Helical
region found in SNAREs,Target SNARE coiled-coil domain; Sec20,Sec20;
T_SNARE,Target SNARE co,CUFF.50565.1
(789 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC61298 similar to UniRef100_A7NVY7 Cluster: Chromosome... 1564 0.0
gnl|LJGI|TC58796 weakly similar to UniRef100_O76689 Cluster: Sod... 115 4e-25
gnl|LJGI|TC65540 similar to UniRef100_A7NVY7 Cluster: Chromosome... 111 7e-24
>gnl|LJGI|TC61298 similar to UniRef100_A7NVY7 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (97%)
Length = 1418
Score = 1564 bits (789), Expect = 0.0
Identities = 789/789 (100%)
Strand = Plus / Plus
Query: 1 atggccaccaacttgcagatgacccctcagctcgaacagatccacggtgaaattcgcgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atggccaccaacttgcagatgacccctcagctcgaacagatccacggtgaaattcgcgac 316
Query: 61 cactttcgagccctcgcaaatggctttcagaagctggataagattaaagattccaacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cactttcgagccctcgcaaatggctttcagaagctggataagattaaagattccaacaga 376
Query: 121 caaagtactcagctggaagaactaacagggaagatgagggagtgcaaaaggttgataaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 caaagtactcagctggaagaactaacagggaagatgagggagtgcaaaaggttgataaaa 436
Query: 181 gagtttgatcgtgaaattaaagatgaagagggaagaaatcccccagaagtgagcaagcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gagtttgatcgtgaaattaaagatgaagagggaagaaatcccccagaagtgagcaagcaa 496
Query: 241 ctcaatgacgaaaagcaatcaatgatcaaggagctaaattcatacgtcgcattaagaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctcaatgacgaaaagcaatcaatgatcaaggagctaaattcatacgtcgcattaagaaaa 556
Query: 301 acgtacatgaataccattggtaataaaaaacttgaactgtttgacaccggagcaggagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acgtacatgaataccattggtaataaaaaacttgaactgtttgacaccggagcaggagca 616
Query: 361 agtgaacctacagctgaagaaaatgtccaactggcatcagaaatgtcaaatcaagaactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agtgaacctacagctgaagaaaatgtccaactggcatcagaaatgtcaaatcaagaactt 676
Query: 421 gtcaatgctgggatgaaaacaatggatgaaactgatcaggctattgagagatctaagcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gtcaatgctgggatgaaaacaatggatgaaactgatcaggctattgagagatctaagcag 736
Query: 481 gttgtacatcaaacagttgaagtgggcacccaaactgctggtaccttgaaaggccaaact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gttgtacatcaaacagttgaagtgggcacccaaactgctggtaccttgaaaggccaaact 796
Query: 541 gaacaaatgggccgtattgttaacgagcttgattcgatccagttctcaattaagaaggcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gaacaaatgggccgtattgttaacgagcttgattcgatccagttctcaattaagaaggcc 856
Query: 601 tcccaactcgttaaggagattggtagacaggtagctacggacaagtgtatcatgcttttt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 tcccaactcgttaaggagattggtagacaggtagctacggacaagtgtatcatgcttttt 916
Query: 661 ctgttccttatcgtctgtggtgtagttgccattattgtcgtgaagattgtgaatcccaac 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 ctgttccttatcgtctgtggtgtagttgccattattgtcgtgaagattgtgaatcccaac 976
Query: 721 aacaaagatatcaaggatattccagggttggcgcctccagctcccactaggaggcttttg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 aacaaagatatcaaggatattccagggttggcgcctccagctcccactaggaggcttttg 1036
Query: 781 tatgtaagg 789
|||||||||
Sbjct: 1037 tatgtaagg 1045
>gnl|LJGI|TC58796 weakly similar to UniRef100_O76689 Cluster: Sodium-dependent
acetylcholine transporter; n=1; Caenorhabditis
elegans|Rep: Sodium-dependent acetylcholine transporter
- Caenorhabditis elegans, partial (3%)
Length = 790
Score = 115 bits (58), Expect = 4e-25
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 704 agattgtgaatcccaacaacaaagatatcaaggatattccagggttggcgcctccagctc 763
||||||||||||||||||||||||| || |||||||| ||||| |||||| |||||||||
Sbjct: 348 agattgtgaatcccaacaacaaagaaattaaggatatcccaggattggcggctccagctc 407
Query: 764 ccactaggaggcttttgtatgtaagg 789
| || |||||||||||||||||||||
Sbjct: 408 caaccaggaggcttttgtatgtaagg 433
>gnl|LJGI|TC65540 similar to UniRef100_A7NVY7 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (10%)
Length = 681
Score = 111 bits (56), Expect = 7e-24
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 706 attgtgaatcccaacaacaaagatatcaaggatattccagggttggcgcctccagctccc 765
||||||||||||||||||||||| || |||||||| ||||| |||||| ||||||||||
Sbjct: 243 attgtgaatcccaacaacaaagaaattaaggatatcccaggattggcggctccagctcca 302
Query: 766 actaggaggcttttgtatgtaagg 789
|| |||||||||||||||||||||
Sbjct: 303 accaggaggcttttgtatgtaagg 326